JSON

Genome sc|0000401

Name

Pantoea astica

Database

NCBI Assembly

Accession

GCA_002434205.1

Genomics

Accession
NCBI Assembly:GCA_002434205.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.92%
  • Contamination: 0.58%
  • Quality: 97.02
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
21.64 ×
Source
Other features
  • G+C Content: 56.14%
  • Coding Density: 87.07%
  • Codon Table: 11
  • N50: 210,842 bp
  • Contigs: 42
  • Largest Contig: 376,525 bp
  • Assembly Length: 4,491,069 bp
  • Ambiguous Assembly Fraction: 0.08%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-07-26
Location
Lat Lon: 40.76 N 73.98 W
Toponym
Geo Loc Name: USA:New York City
Environment
Env Material: metal
Sample Type: metagenomic assembly
Env Biome: city
Isolation Source: metal
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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