JSON

Genome sc|0000410

Name

Pantoea formicae

Database

NCBI Assembly

Accession

GCF_011752625.1

Genomics

Accession
NCBI Assembly:GCF_011752625.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.44%
  • Quality: 92.8
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 62.0%)
  • 1 23S rRNA (up to 78.0%)
  • tRNAs for 20 amino acids
Sequencing depth
113.0 ×
Source
Other features
  • G+C Content: 52.91%
  • Coding Density: 86.98%
  • Codon Table: 11
  • N50: 695,466 bp
  • Contigs: 62
  • Largest Contig: 968,654 bp
  • Assembly Length: 5,899,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-01-21
Location
Not detected
Toponym
Geo Loc Name: Brazil: Sao Paulo State
Environment
Sample Type: bacterial culture
Isolation Source: Acromyrmex fungus garden
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 10 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license