Genome sc|0000414

Genomics

Accession

NCBI Assembly:GCA_002299595.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.16%
• Contamination: 1.1%
• Quality: 90.66

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 17 amino acids

Sequencing depth

33.53 ×

Source

• BioSample: SAMN06457564
• BioSample: SAMN03270118

Other features

• G+C Content: 57.15%
• Coding Density: 87.13%
• Codon Table: 11
• N50: 32,523 bp
• Contigs: 191
• Largest Contig: 114,927 bp
• Assembly Length: 3,950,619 bp
• Ambiguous Assembly Fraction: 0.057%

Submitter comments

Quality assessed with CheckM 1 v. 0.18 (completeness = 96.16%; contamination = 1.1%) with the Enterobacteriaceae marker set consisting of 876 markers, and CheckM 2 v. 0.1.3 (completeness = 85.91%; contamination = 0.89%) with a specific neural network model. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2013-07-15

Location

Lat Lon: 40.67 N 73.88 W

Toponym

Geo Loc Name: USA:New York City

Environment

Env Material: metal/plastic

Sample Type: metagenomic assembly

Env Biome: city

Isolation Source: metal/plastic

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN06457564: Uncultivated Enterobacteriaceae bacterium UBA648 genome recovered from SRX822124
• SAMN03270118: Metagenome or environmental sample from terrestrial metagenome

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Metadata retrieved 10 months ago