Genome sc|0000440

Name

Hydrothermarchaeum profundi^Ts

Database

NCBI Assembly

Accession

GCA_002011125.1

Genomics

Accession

NCBI Assembly:GCA_002011125.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 98.13%
Contamination: 1.8%
Quality: 89.13

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids

Sequencing depth

116.9 ×

Source

Other features

G+C Content: 39.14%
Coding Density: 92.14%
Codon Table: 11
N50: 149,032 bp
Contigs: 22
Largest Contig: 364,381 bp
Assembly Length: 2,062,134 bp
Ambiguous Assembly Fraction: 0.00058%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2011-07-12

Location

Lat Lon: 47.76 N 127.76 W

Toponym

Geo Loc Name: Pacific Ocean

Environment

Env Material: water

Sample Type: metagenomic assembly

Env Biome: hydrothermal fluid

Isolation Source: basaltic crustal fluids

Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Diffuse flow

Other

Depth: 454

Package

Ncbi Submission Package: Microbe.1.0 • MIMARKS.survey.sediment.6.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.sediment

All retrieved samples

Metadata retrieved 10 months ago

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