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Salinibacter pampae

Citation

Formal styling
Salinibacter pampae Viver et al., 2023
Effective publication
Viver et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:b5vsvzg3 (validated)
Canonical URL
https://seqco.de/i:23671

Nomenclature

Rank
Species
Syllabication
pam'pae
Etymology
N.L. gen. n. pampae, of the pampa, the grassland plain in South America, referring here to the Pampa region in Argentina
Nomenclatural type
NCBI Assembly: GCA_947077715.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Salinibacter pampae constitute the most abundant Salinibacter species in the hypersaline lakes of Colorada Chica and Colorada Grande located in the region of la Pampa, Argentina. The MAG encoded, and therefore would probably be positive for oxidase, catalase, lysine decarboxylase and starch metabolism. The MAG encoded the genes for flagella assembly, indicating motility.
Classification
Bacteria » Rhodothermota » Rhodothermia » Rhodothermales » Salinibacteraceae » Salinibacter » Salinibacter pampae
Parent
Salinibacter

Genomics

Accession
NCBI Assembly:GCA_947077715.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.0%
  • Contamination: 2.9%
  • Quality: 83.5
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
56.0 ×
Source
Other features
  • G+C Content: 65.53%
  • Coding Density: 85.43%
  • Codon Table: 11
  • N50: 20,253 bp
  • Contigs: 225
  • Largest Contig: 60,535 bp
  • Assembly Length: 3,090,338 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Script HMM.essential.rb from the Enveomics scripts collection using default paramentes was used for assess the completness and contamination of the MAG.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Viver, Tomeu about 2 years ago
Submitted by
Viver, Tomeu over 1 year ago
Curators
Endorsed by
Chuvochina, Maria over 1 year ago
Validated by
Rodriguez-R, Luis M over 1 year ago
Date of priority
2023-04-02 02:56 PM (UTC)

Publications
1

Citation Title
Viver et al., 2023, Systematic and Applied Microbiology Description of two cultivated and two uncultivated new Salinibacter species, one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov
Effective publication


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