Phelpsiimicrobium noxiivivens^Ts

Citation

Formal styling

Phelpsiimicrobium noxiivivens^Ts Seymour et al., 2023 (valid 2024)

Effective publication

Seymour et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xqyhj6of (validated)

Canonical URL

https://seqco.de/i:23740

Nomenclature

Rank

Species

Syllabication

nox.i.i.vi'vens

Etymology

N.L. fem. n. Nox, from the Roman primordial goddess and personification of the night, Nox; L. pres. part. vivens, living; N.L. part. adj. noxiivivens, living in darkness

Nomenclatural type

NCBI Assembly: GCA_001873995.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species is the type for the genus Phelpsiimicrobium. The estimated genome size for the species is between 1.5 to 1.8 Mb, with %GC for genomes ranging between 43.80-44.08 %. Genes for acetogenic pathways, and an Rnf complex is present in the genomes of this species. Genes for respiratory complexes I and V (respiratory F-type ATPase) are also present in the genomes, and are likely involved in redox balancing and ATP synthesis. All genes associated with the tight-adherence (Tad) complex, and the production of a Type-4a pilus is present in the genomes. A "symbiotic" F-type ATPase and very large ORFs are encoded by the genomes. All assemblies assigned to this species originate from Crystal Geyser, near Green River, Utah, USA. The nomenclatural type for the species is the genome GCA_001873995.1.

Classification

Bacteria » Omnitrophota » “Velamenicoccia” » “Velamenicoccales” » “Velamenicoccaceae” » Phelpsiimicrobium » Phelpsiimicrobium noxiivivens^Ts

Parent

Phelpsiimicrobium gtdb

Genomics

Accession

NCBI Assembly:GCA_001873995.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.27%
• Contamination: 1.82%
• Quality: 88.17

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN04328230
• BioSample: SAMN02419149

Other features

• G+C Content: 44.08%
• Coding Density: 92.99%
• Codon Table: 11
• N50: 58,930 bp
• Contigs: 39
• Largest Contig: 97,064 bp
• Assembly Length: 1,559,754 bp
• Ambiguous Assembly Fraction: 0.011%

Automated checks

Complete

See additional details

---

Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_001873995.1
• GTDB Tree: s__Phelpsiimicrobium noxiivivens
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Phelpsiimicrobium noxiivivens (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 18 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike about 2 years ago

Submitted by

Palmer, Marike 5 months ago

Curators

• St. John, Emily (nomenclature)
• Valero Tebar, Juan (genomics)
• Rodriguez-R, Luis M

Validated by

Rodriguez-R, Luis M 18 days ago

Date of priority

2024-07-12 07:11 PM (UTC)