Pseudoplanktomarina karensisTs


Citation

Formal styling
Pseudoplanktomarina karensisTs Liu et al., 2023 (priority 2024)
Effective publication
Liu et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:8lujptmc (validated)
Canonical URL
https://seqco.de/i:24063 Copy

Nomenclature

Rank
Species
Syllabication
kar.en'sis
Etymology
N.L. fem. adj. karensis, pertaining to the Kara Sea, corresponding to the origin from where the genome was recovered (Kara Sea)
Nomenclatural type
NCBI Assembly: GCA_951541495.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material, GCA_951541495.1 (MAG B2-20), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Kara Sea, Arctic Ocean (Biosample accession: SAMEA4397239). The assembly genome is of high quality with 95.6 % completeness with 0.02 % contamination and the genome contains 16 tRNA genes. The genome size is 2.28 (raw: 2.18) with a GC content of 0.44. Pseudoplanktomarina karensis is the type species of the new genus Pseudoplanktomarina
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina » Pseudoplanktomarina karensisTs
Parent
Pseudoplanktomarina

Genomics

Accession
NCBI Assembly:GCA_951541495.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 0.02%
  • Quality: 95.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 16 amino acids
Sequencing depth
28.0 ×
Source
Other features
  • G+C Content: 44.0%
  • Coding Density: 91.02%
  • Codon Table: 11
  • N50: 57,818 bp
  • Contigs: 71
  • Largest Contig: 175,119 bp
  • Assembly Length: 2,180,067 bp
  • Ambiguous Assembly Fraction: 0.096%
Automated checks
Complete

Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Brinkhoff, Thorsten
Submitted
About 1 year ago by Brinkhoff, Thorsten
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 1 year ago by Palmer, Marike
Date of priority
2024-07-30 10:55 AM (UTC)

Publications
1

Citation Title
Liu et al., 2023, Microbiome Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster
Effective publication



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