Pseudoplanktomarina karensis^Ts

Citation

Formal styling

Pseudoplanktomarina karensis^Ts Liu et al., 2023 (valid 2024)

Effective publication

Liu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:8lujptmc (validated)

Canonical URL

https://seqco.de/i:24063

Nomenclature

Rank

Species

Syllabication

kar.en'sis

Etymology

N.L. fem. adj. karensis, pertaining to the Kara Sea, corresponding to the origin from where the genome was recovered (Kara Sea)

Nomenclatural type

NCBI Assembly: GCA_951541495.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material, GCA_951541495.1 (MAG B2-20), is a metagenome-assembled genome from a sample taken at the epipelagic zone in the Kara Sea, Arctic Ocean (Biosample accession: SAMEA4397239). The assembly genome is of high quality with 95.6 % completeness with 0.02 % contamination and the genome contains 16 tRNA genes. The genome size is 2.28 (raw: 2.18) with a GC content of 0.44. Pseudoplanktomarina karensis is the type species of the new genus Pseudoplanktomarina. 

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Pseudoplanktomarina » Pseudoplanktomarina karensis^Ts

Parent

Pseudoplanktomarina

Genomics

Accession

NCBI Assembly:GCA_951541495.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.6%
• Contamination: 0.02%
• Quality: 95.5

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 16 amino acids

Sequencing depth

28.0 ×

Source

• BioSample: SAMEA4397239

Other features

• G+C Content: 44.0%
• Coding Density: 91.02%
• Codon Table: 11
• N50: 57,818 bp
• Contigs: 71
• Largest Contig: 175,119 bp
• Assembly Length: 2,180,067 bp
• Ambiguous Assembly Fraction: 0.096%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_951541495.1
• Wikispecies: Pseudoplanktomarina karensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Brinkhoff, Thorsten almost 2 years ago

Submitted by

Brinkhoff, Thorsten 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 5 months ago

Validated by

Palmer, Marike 5 months ago

Date of priority

2024-07-30 10:55 AM (UTC)