Hydrothermus pacificus^Ts

Citation

Formal styling

Hydrothermus pacificus^Ts Chuvochina et al., 2019 (valid 2023)

Effective publication

Chuvochina et al., 2019

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:ivphtsqc (validated)

Canonical URL

https://seqco.de/i:31414

Nomenclature

Rank

Species

Syllabication

pa.ci'fi.cus

Etymology

L. masc. adj. pacificus, peaceful, pertaining to Pacific Ocean

Nomenclatural type

NCBI Assembly: GCA_002011615.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This is one of the first genomic representatives of the EM3 lineage, later known as Candidate bacterial phylum Hydrothermae as proposed by Jungbluth et al. (2017). The MAG of this species has been reconstructed from the deep subsurface biosphere - the Juan de Fuca Ridge subseafloor. 

Classification

Bacteria » “Hydrothermota” » Hydrothermia » Hydrothermales » Hydrothermaceae » Hydrothermus » Hydrothermus pacificus^Ts

Parent

Hydrothermus gtdb

Genomics

Accession

NCBI Assembly:GCA_002011615.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.53%
• Contamination: 0.0%
• Quality: 91.53

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

42.1 ×

Source

• BioSample: SAMN06226389
• BioSample: SAMN03166137

Other features

• G+C Content: 34.75%
• Coding Density: 95.09%
• Codon Table: 11
• N50: 176,033 bp
• Contigs: 19
• Largest Contig: 342,452 bp
• Assembly Length: 2,059,798 bp
• Ambiguous Assembly Fraction: 0.0018%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_002011615.1
• GTDB Tree: s__Hydrothermus pacificus
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Hydrothermus pacificus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria over 1 year ago

Submitted by

Chuvochina, Maria over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike over 1 year ago

Date of priority

2023-08-22 04:55 AM (UTC)