JSONPDF

Hadarchaeum yellowstonenseTs

Citation

Formal styling
Hadarchaeum yellowstonenseTs Chuvochina et al., 2019 (valid 2023)
Effective publication
Chuvochina et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ivphtsqc (validated)
Canonical URL
https://seqco.de/i:31423

Nomenclature

Rank
Species
Syllabication
yel.low.ston.en'se
Etymology
N.L. neut. adj. yellowstonense, pertaining to the Yellowstone National Park, the place of sampling from where organism was found
Nomenclatural type
NCBI Assembly: GCA_001515205.2
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A detailed metabolic description of the proposed Ca. H. yellowstonense, formerly identified as YNP_45, is given in the original work by Baker et al. (2016) Nat. Microbiol. 1, 16002. doi: 10.1038/NMICROBIOL.2016.2. The organisms was found in hot spring in Yellowstone National Park, USA.
The reduced genome size and previously inferred gene content (821) suggests that the genome has undergone streamlining. The inferred metabolic capabilities indicates oxidation of carbon monoxide, which may be coupled to H2O or nitrite reduction to ammonia. Also inferred to contain a variety of central carbon metabolic (C1 pathway) genes found in methanogens, which may be used for carbon fixation. The organism is inferred to be thermophilic.
Classification
Archaea » Hadarchaeota » Hadarchaeia » Hadarchaeales » Hadarchaeaceae » Hadarchaeum » Hadarchaeum yellowstonenseTs
Parent
Hadarchaeum gtdb

Genomics

Accession
NCBI Assembly:GCA_001515205.2
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.13%
  • Contamination: 1.22%
  • Quality: 89.03
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.0 ×
Source
Other features
  • G+C Content: 54.84%
  • Coding Density: 91.21%
  • Codon Table: 11
  • N50: 23,895 bp
  • Contigs: 64
  • Largest Contig: 74,826 bp
  • Assembly Length: 1,231,125 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were calculated using Checkm2.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria over 1 year ago
Submitted by
Chuvochina, Maria over 1 year ago
Curators
Endorsed by
Palmer, Marike over 1 year ago
Validated by
Palmer, Marike over 1 year ago
Date of priority
2023-08-22 04:55 AM (UTC)

Publications
2

Citation Title
Chuvochina et al., 2019, Systematic and Applied Microbiology The importance of designating type material for uncultured taxa
Effective publication
Baker et al., 2016, Nature Microbiology Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license