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Saccharimonas aalborgensisTs

Citation

Formal styling
Saccharimonas aalborgensisTs Albertsen et al., 2013 (valid 2023)
Effective publication
Albertsen et al., 2013
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:2jgcok0b (validated)
Canonical URL
https://seqco.de/i:31965

Nomenclature

Rank
Species
Syllabication
aal.borg.en'sis
Etymology
N.L. fem. adj. aalborgensis, pertaining to the city of Aalborg, where the sample containing the organism was obtained
Nomenclatural type
NCBI Assembly: GCF_000392435.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The description is the same as given by Albertsen et al., 2013:
“Candidatus Saccharimonas aalborgensis” has a coccus morphology with a size of ≈0.7 µm in diameter. It has obligate fermentative metabolism, fermenting glucose and other sugars, and produces lactate. It has a monoderm cell envelope and stains Gram-positive.
Classification
Bacteria » “Saccharimonadota” » “Saccharimonadia” » Saccharimonadales » Saccharimonadaceae » Saccharimonas » Saccharimonas aalborgensisTs
Parent
Saccharimonas gtdb

Genomics

Accession
NCBI Assembly:GCF_000392435.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.75%
  • Contamination: 0.33%
  • Quality: 98.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
890.0 ×
Source
Other features
  • G+C Content: 48.51%
  • Coding Density: 91.09%
  • Codon Table: 11
  • N50: 1,013,781 bp
  • Contigs: 1
  • Largest Contig: 1,013,781 bp
  • Assembly Length: 1,013,781 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 was used to estimate genome completeness and contamination.

Chklovski, A., Parks, D.H., Woodcroft, B.J. et al. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20, 1203–1212 (2023). https://doi.org/10.1038/s41592-023-01940-w
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria over 1 year ago
Submitted by
Chuvochina, Maria over 1 year ago
Curators
Endorsed by
Palmer, Marike over 1 year ago
Validated by
Palmer, Marike over 1 year ago
Date of priority
2023-08-15 07:51 AM (UTC)

Publications
2

Citation Title
Peñalver et al., 2024, Environmental Microbiology Experimental evidence of <scp>d</scp>‐glutamate racemase activity in the uncultivated bacterium Candidatus Saccharimonas aalborgensis
Albertsen et al., 2013, Nature Biotechnology Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Effective publication


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