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Methanoplasma cognatum

Citation

Formal styling
Methanoplasma cognatum Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32526

Nomenclature

Rank
Species
Syllabication
cog.na'tum
Etymology
L. neut. adj. cognatum, related by blood, sibling, referring to the Methanoplasma termitum as relative
Nomenclatural type
NCBI Assembly: GCA_009777615.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species identified by metagenomic analyses. The G+C content of the type genome is 52.2%, and the estimated genome size is 1.61 Mbp.
Classification
Archaea » Methanobacteriota » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanoplasma » Methanoplasma cognatum
Parent
Methanoplasma

Genomics

Accession
NCBI Assembly:GCA_009777615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.98%
  • Contamination: 2.42%
  • Quality: 85.88
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
38.0 ×
Source
Other features
  • G+C Content: 52.26%
  • Coding Density: 90.19%
  • Codon Table: 11
  • N50: 267,672 bp
  • Contigs: 7
  • Largest Contig: 648,276 bp
  • Assembly Length: 1,619,733 bp
  • Ambiguous Assembly Fraction: 0.0062%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Protasov, Evgenii about 1 year ago
Submitted by
Protasov, Evgenii 7 months ago
Curators
Validated by
Rodriguez-R, Luis M 5 months ago
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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