Methanimicrococcus hacksteinii


Citation

Formal styling
Methanimicrococcus hacksteinii Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Cannonical URL
https://seqco.de/i:32595

Nomenclature

Rank
Species
Syllabication
hack.stein'i.i.
Etymology
N.L. gen. masc. n. hacksteinii, of Hackstein, named in honor of Johannes H.P. Hackstein for his important contributions on the hydrogenosomes of anaerobic protists and methanogenesis in arthropod guts
Nomenclatural type
NCBI Assembly: GCA_032714515.1
Reference strain
DSM 115570 = JCM 39383
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Irregular cocci cells 1–2 µm in diameter, non-motile. Use methanol and methylamines as methanogenesis substrates together with hydrogen. Requires acetate, Casamino acids, and coenzyme M.  The optimum temperature is 37 °C. The G+C content of the type genome is 42.9%, and the estimated genome size is 2.04 Mbp. 
Classification
Archaea » Methanobacteriota » “Methanomicrobia” » Methanosarcinales » Methanosarcinaceae » Methanimicrococcus » Methanimicrococcus hacksteinii
Parent
Methanimicrococcus ncbi

Genomics

Accession
NCBI Assembly:GCA_032714515.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 93.8%
  • Contamination: 0.7%
  • Quality: 90.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 77.0%)
  • 2 23S rRNAs (up to 41.0%)
  • tRNAs for 20 amino acids
Sequencing depth
115.0 ×
Source
Other features
  • G+C Content: 42.9%
  • Coding Density: 79.43%
  • Codon Table: 11
  • N50: 104,581 bp
  • Contigs: 37
  • Largest Contig: 237,857 bp
  • Assembly Length: 2,044,068 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Protasov, Evgenii 10 months ago
Submitted by
Protasov, Evgenii 2 months ago
Curators
Validated by
Rodriguez-R, Luis M 19 days ago
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication



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