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Methanimicrococcus hongohii

Citation

Formal styling
Methanimicrococcus hongohii Protasov et al., 2023 (priority 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32596

Nomenclature

Rank
Species
Syllabication
hon.goh'i.i.
Etymology
N.L. gen. masc. n. hongohii, of Hongoh, named after Yuichi Hongoh in recognition of his important contributions to arthropod gut microbiology
Nomenclatural type
NCBI Assembly: GCA_032594095.1
Reference strain
Strain sc|0038666: Hf6 = DSM 114388 = JCM 39385 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Irregular cocci cells 1–2 µm in diameter, non-motile. Use methanol and methylamines as methanogenesis substrates together with hydrogen. Requires acetate and Casamino acids; formate is stimulatory. The optimum temperature is 37 °C. The G+C content of the type genome is 41.0%, and the genome size is 2.13 Mbp. 
Classification
Archaea » Halobacteriota » Methanosarcinia » Methanosarcinales » Methanosarcinaceae » Methanimicrococcus » Methanimicrococcus hongohii
Parent
Methanimicrococcus ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_032594095.1
Cultures
Strain sc|0038666
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
143.0 ×
Source
Other features
  • G+C Content: 43.0%
  • Coding Density: 75.43%
  • Codon Table: 11
  • N50: 2,193,213 bp
  • Contigs: 1
  • Largest Contig: 2,193,213 bp
  • Assembly Length: 2,193,213 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 11 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Protasov, Evgenii
Submitted
Over 1 year ago by Protasov, Evgenii
Curators
Validated
Over 1 year ago by Rodriguez-R, Luis M
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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seqco.de/r:hfttq0ec