Mesorhizobium humile

Citation

Formal styling

Mesorhizobium humile van Lill et al., 2024

Effective publication

van Lill et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:3oauw4q0 (validated)

Cannonical URL

https://seqco.de/i:32827

Nomenclature

Rank

Species

Syllabication

hu.mi'le

Etymology

L. neut. adj. humile, humble, referring to the type strain's small colony size on YM agar and limited carbon source utilisation.

Nomenclatural type

NCBI Assembly: GCA_033977215.1

Reference strain

VK2B

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Cells are Gram-negative, motile rods. On YM agar, following 5 days of incubation at 28 °C, the colonies are small, circular, white, opaque with entire margins and flat elevations with dry consistency. The strain was able to grow in the pH range of 6 to 9 and tolerate NaCl concentration of 0.3 % to 1.5 %. The strain was able to grow at 4 °C to 35 °C. The strain tested positive for urease and esculin hydrolysis. The strain could assimilate 4-nitrophenyl-β,D-galactopyranoside, D-glucose, L-arabinose, D-mannose, D-mannitol, N-acetyl-glucosamine, D-maltose, potassium gluconate, adipic acid and malic acid. The strain could only utilize glucuronamide, α-keto-glutaric acid and D-malic acid as the sole sources of carbon. The strain was able to form effective symbiosis with V. karroo.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium humile

Parent

Mesorhizobium

Genomics

Accession

NCBI Assembly:GCA_033977215.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 0.9%
• Quality: 94.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

230.8 ×

Source

• BioSample: SAMN37150258

Other features

• G+C Content: 63.56%
• Coding Density: 86.53%
• Codon Table: 11
• N50: 234,275 bp
• Contigs: 78
• Largest Contig: 613,800 bp
• Assembly Length: 6,750,448 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_033977215.1

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified about 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Van Lill, Melandre 8 months ago

Submitted by

Van Lill, Melandre 6 months ago

Curators

• Rodriguez-R, Luis M (nomenclature) (genomics)

Endorsed by

Rodriguez-R, Luis M 3 months ago

Validated by

Rodriguez-R, Luis M about 2 months ago

Date of priority

2024-04-27 05:48 AM (UTC)