Kaelpia imicola

Citation

Formal styling

Kaelpia imicola Williams et al., 2021 (valid 2024)

Effective publication

Williams et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:2rggbgyb (validated)

Canonical URL

https://seqco.de/i:33285

Nomenclature

Rank

Species

Syllabication

i.mi'co.la

Etymology

L. masc. adj. imus, bottom; L. n. suff. -cola, inhabitant; N.L. fem. n. imicola, bottom-dweller

Nomenclatural type

NCBI Assembly: GCA_030765505.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species belongs to the genus Kaelpia. The description for this species is derived from Williams et al., 2021, and supplemented with additional information. This species is predicted to be heterotrophic. Fermentation of glucose to acetyl-CoA through EMP pathway is likely, and the genome encodes a V-type ATPase and Rnf complex for ATP synthesis, and a Group A3 [FeFe] hydrogenase. The genome also encodes a conductive pilin and genes for the production of a Type-4a pilus. The type for this species is the genome designated 3300035698_1655.

Classification

Incertae sedis (Bacteria) » “Kaelpiales” » “Kaelpiaceae” » Kaelpia » Kaelpia imicola

Parent

Kaelpia gtdb

Genomics

Accession

NCBI Assembly:GCA_030765505.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.54%
• Contamination: 0.03%
• Quality: 97.39

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 7.0%)
• 1 23S rRNA (up to 8.0%)
• tRNAs for 19 amino acids

Sequencing depth

18.0 ×

Source

• BioSample: SAMN34002215
• And 100 more…

Other features

• G+C Content: 37.73%
• Coding Density: 93.21%
• Codon Table: 11
• N50: 78,421 bp
• Contigs: 43
• Largest Contig: 155,316 bp
• Assembly Length: 1,457,239 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  

Automated checks

Complete

See additional details

---

Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_030765505.1
• GTDB Tree: s__Kaelpia imicola
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Kaelpia imicola (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Allen, Michelle about 1 year ago

Submitted by

Allen, Michelle 4 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 2 months ago

Date of priority

2024-09-04 06:09 AM (UTC)