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“Sulfobium mesophilum”

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Citation

Formal styling
“Sulfobium mesophilum” Zecchin et al., 2018
Effective publication
Zecchin et al., 2018
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:350

Nomenclature

Rank
Species
Syllabication
me.so'phi.lum
Etymology
Gr. adj. mesos, middle; Gr. adj. philos, friend, loving; N.L. neut. n. mesophilum, loving medium temperatures
Nomenclatural type
NCBI Assembly: GCA_900302705.1

Taxonomy

Description
Sulfobium mesophilum encodes the complete pathways for dissimilatory sulfate reduction and nitrate reduction to ammonia. Based on its genome, it is able to utilize butyrate, acetate, formate, and molecular hydrogen as electron donors. With a complete Wood-Ljungdahl pathway, Sulfobium mesophilum possesses the metabolic potential to oxidize organic matter completely to CO2.
Classification
Bacteria » Nitrospirota » Nitrospiria » Nitrospirales » Nitrospiraceae » “Sulfobium” » “Sulfobium mesophilum”
Parent
“Sulfobium” gtdb

Genomics

Accession
NCBI Assembly:GCA_900302705.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 87.7%
  • Contamination: 0.9%
  • Quality: 83.2
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 15 amino acids
Source
Other features
  • G+C Content: 48.78%
  • Coding Density: 87.75%
  • Codon Table: 11
  • N50: 29,632 bp
  • Contigs: 151
  • Largest Contig: 106,945 bp
  • Assembly Length: 2,770,094 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 28 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 6 years ago and claimed 9 days ago by Rodriguez-R, Luis M

Publications
1

Citation Title
Zecchin et al., 2018, Applied and Environmental Microbiology Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus “Candidatus Sulfobium”
Effective publication


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