Eremiobacter antarcticus^Ts

Citation

Formal styling

Eremiobacter antarcticus^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:42509

Nomenclature

Rank

Species

Syllabication

an.tar'cti.cus

Etymology

L. masc. adj. antarcticus, southern, pertaining to Antarctica

Nomenclatural type

NCBI Assembly: GCA_003244105.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Heterotroph and autotroph. Hydrogenotrophic chemolithoautotrophy using Group 1h [NiFe] hydrogenase and CBB cycle; capable of using atmospheric H2. Organic substrates include peptides, amino acids, carboxylates, acetate, sarcosine, formate, methanol, poly- and oligosaccharides, sugars, catechol, 4-hydroxybenzoate. Glycogen storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » Eremiobacterales » Eremiobacteraceae » Eremiobacter » Eremiobacter antarcticus^Ts

Parent

Eremiobacter assigned in Ji et al., 2021

Alternative placements

• Eremiobacter gtdb assigned in Ji et al., 2021

Genomics

Accession

NCBI Assembly:GCA_003244105.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.07%
• Contamination: 0.93%
• Quality: 94.42

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 19.0%)
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

25.0 ×

Source

• BioSample: SAMN09209454
• And 3 more…

Other features

• G+C Content: 62.5%
• Coding Density: 92.37%
• Codon Table: 11
• N50: 214,289 bp
• Contigs: 19
• Largest Contig: 462,793 bp
• Assembly Length: 2,635,737 bp
• Ambiguous Assembly Fraction: 0.0041%

Submitter comments

MAG completeness and contamination were using CheckM (ver. 1.0.12). rRNA genes assessed with Barrnap (ver. 0.9) with a 10% lenght rejection threshold (--reject 0.1)

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003244105.1
• GTDB Tree: s__Eremiobacter antarcticus
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Eremiobacter antarcticus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 days ago

Date of priority

2024-10-17 12:47 AM (UTC)