Xenobium occultum^Ts

Citation

Formal styling

Xenobium occultum^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:43215

Nomenclature

Rank

Species

Syllabication

oc.cul'tum

Etymology

L. neut. adj. occultum, hidden

Nomenclatural type

NCBI Assembly: GCA_002423485.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate heterotroph. Microaerobic; anaerobic respiration by DNRA. Fermentative. Organic substrates include peptides, amino acids, carboxylates, glycerol, poly- and oligosaccharides, sugars, 4-hydroxybenzoate. Degradation of β-glucosides (GH3), cellulose (endoglucanase GH5_5), starch (cyclomaltodextrinase GH13, and GH13_2; 4-α-glucanotransferase GH77), maltodextrin (GH13_21), α-glucans (GH31), trehalose (GH37), and xyloglucan (GH74). PHA storage; glycogen storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Xenobiia » Xenobiales » Xenobiaceae » Xenobium » Xenobium occultum^Ts

Parent

Xenobium gtdb

Genomics

Accession

NCBI Assembly:GCA_002423485.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.79%
• Contamination: 4.68%
• Quality: 73.39

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

29.4 ×

Source

• BioSample: SAMN06454064
• BioSample: SAMN01828451

Other features

• G+C Content: 67.5%
• Coding Density: 91.22%
• Codon Table: 11
• N50: 82,137 bp
• Contigs: 88
• Largest Contig: 224,259 bp
• Assembly Length: 4,705,588 bp
• Ambiguous Assembly Fraction: 0.032%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_002423485.1
• GTDB Tree: s__Xenobium occultum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Xenobium occultum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 days ago

Date of priority

2024-10-17 12:47 AM (UTC)