Kaistia cartagenensis

Citation

Formal styling

Kaistia cartagenensis Jiménez et al., 2024

Effective publication

Jiménez et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:ayug-nu6 (validated)

Canonical URL

https://seqco.de/i:43934

Nomenclature

Rank

Species

Syllabication

car.ta.ge.nen'sis

Etymology

N.L. fem. adj. cartagenensis, pertaining to Cartagena de Indias, the city close to Baru Island, where the mangrove soil samples were collected

Nomenclatural type

NCBI Assembly: GCA_963966455.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, ANI, AAI, 16S rRNA gene phylogenetic reconstruction, phylogenomic tree, and the type material is the genome MAG11_P8. The MAG was reconstructed from PET-transforming bacterial consortium and encoded for a putative PET hydrolase. In addition, genes involved in PET-monomers catabolism were found within the MAG.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Kaistiaceae » Kaistia » Kaistia cartagenensis

Parent

Kaistia

Genomics

Accession

NCBI Assembly:GCA_963966455.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.0%
• Contamination: 1.0%
• Quality: 92.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 56.0%)
• tRNAs for 19 amino acids

Sequencing depth

2804.0 ×

Source

• BioSample: SAMEA115286371
• BioSample: SAMEA115283886

Other features

• G+C Content: 67.71%
• Coding Density: 90.35%
• Codon Table: 11
• N50: 23,892 bp
• Contigs: 278
• Largest Contig: 78,720 bp
• Assembly Length: 4,551,535 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM v1.2.2 

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_963966455.1
• Wikispecies: Kaistia cartagenensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Jimenez, Diego 10 months ago

Submitted by

Jimenez, Diego 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Rodriguez-R, Luis M 6 months ago

Validated by

Palmer, Marike 3 months ago

Date of priority

2024-09-30 02:00 PM (UTC)