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Fervidibacter japonicus

Citation

Formal styling
Fervidibacter japonicus Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44080

Nomenclature

Rank
Species
Syllabication
ja.po.ni'cus
Etymology
N.L. masc. adj. japonicus, of Japan, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_002898575.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The sole genome representative of this species was recovered from a metagenome from Hishikari Mine, Japan. The GC content if 59%. The genome encodes both the high- and low-affinity terminal oxidases.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter japonicus
Parent
Fervidibacter

Genomics

Accession
NCBI Assembly:GCA_002898575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.6%
  • Quality: 83.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 58.5%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 69,561 bp
  • Contigs: 75
  • Largest Contig: 172,999 bp
  • Assembly Length: 3,153,697 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 9 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 5 months ago
Validated by
St. John, Emily 29 days ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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