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Fervidibacter japonicus

Citation

Formal styling
Fervidibacter japonicus Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44080

Nomenclature

Rank
Species
Syllabication
ja.po.ni'cus
Etymology
N.L. masc. adj. japonicus, of Japan, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_002898575.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The sole genome representative of this species was recovered from a metagenome from Hishikari Mine, Japan. The GC content if 59%. The genome encodes both the high- and low-affinity terminal oxidases.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Fervidibacter » Fervidibacter japonicus
Parent
Fervidibacter

Genomics

Accession
NCBI Assembly:GCA_002898575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.6%
  • Quality: 83.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 58.5%
  • Coding Density: 91.04%
  • Codon Table: 11
  • N50: 69,561 bp
  • Contigs: 75
  • Largest Contig: 172,999 bp
  • Assembly Length: 3,153,697 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike, created 10 months ago
Submitted by
Palmer, Marike 10 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 6 months ago
Validated by
St. John, Emily about 2 months ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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