Thermosaccharophagus tengchongensis

Citation

Formal styling

Thermosaccharophagus tengchongensis Nou et al., 2024

Effective publication

Nou et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:x3m88du8 (validated)

Canonical URL

https://seqco.de/i:44086

Nomenclature

Rank

Species

Syllabication

teng.chong.en'sis

Etymology

N.L. masc. adj. tengchongensis, of Tengchong, Yunnan province, south-west China, where this organism is from

Nomenclatural type

INSDC Nucleotide: JAVHTD000000000

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Genomes of this species were recovered from metagenomes from geothermal springs in Tengchong, China. GC content is approximately 52%. No terminal oxidases and the presence of the Wood-Ljundahl pathway indicate that this species is likely a strict anaerobe.

Classification

Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Thermosaccharophagaceae » Thermosaccharophagus » Thermosaccharophagus tengchongensis

Parent

Thermosaccharophagus

Genomics

Accession

INSDC Nucleotide:JAVHTD000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.44%
• Contamination: 0.64%
• Quality: 94.24

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

18.0 ×

Source

• SRA: SRX22851831

Other features

• G+C Content: 52.0%
• Coding Density: 91.12%
• Codon Table: 11
• N50: 102,274 bp
• Contigs: 44
• Largest Contig: 251,150 bp
• Assembly Length: 2,742,608 bp
• Ambiguous Assembly Fraction: 0.0015%

Submitter comments

Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.

Automated checks

Complete

See additional details

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Last modified 2 months ago

Metadata

Outside links and data sources

• Wikispecies: Thermosaccharophagus tengchongensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike, created 10 months ago

Submitted by

Palmer, Marike 10 months ago

Curators

• St. John, Emily (nomenclature)
• Van Lill, Melandre
• Valero Tebar, Juan
• Rodriguez-R, Luis M (genomics)

Endorsed by

Rodriguez-R, Luis M 6 months ago

Validated by

St. John, Emily about 2 months ago

Date of priority

2024-11-20 02:57 PM (UTC)