SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0001422
JSON
Genome sc|0001422
Name
Methanocrinis harundinaceus
Ts
Database
NCBI Assembly
Accession
GCF_000235565.1
Genomics
Accession
NCBI Assembly:
GCF_000235565.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.79%
Contamination:
2.26%
Quality:
88.49
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
494.0 ×
Source
BioSample: SAMN02603883
Other features
G+C Content:
60.6%
Coding Density:
86.97%
Codon Table:
11
N50:
2,559,043 bp
Contigs:
2
Largest Contig:
2,559,043 bp
Assembly Length:
2,571,034 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
10 days ago
Sample Metadata
BioSample entries
BioSample: SAMN02603883
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN02603883
: Sample from Methanothrix harundinacea 6Ac
Metadata retrieved
10 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN02603883
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN02603883
strain
6Ac
NCBI submission package
Generic.1.0
organism
Methanothrix harundinacea 6Ac
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2014-01-30
ENA-LAST-UPDATE
2022-12-12
Search
×
Names
Publications
Authors
Subjects