Genome sc|0001614

Genomics

Accession

INSDC Nucleotide:JBBKAY000000000

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.12%
• Contamination: 0.54%
• Quality: 90.42

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

12.05 ×

Source

• SRA: SRX22731271

Other features

• G+C Content: 44.33%
• Coding Density: 96.54%
• Codon Table: 11
• N50: 15,255 bp
• Contigs: 128
• Largest Contig: 70,772 bp
• Assembly Length: 1,457,668 bp
• Ambiguous Assembly Fraction: 0.37%

Submitter comments

Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SRS19719932

Date

Collection Date: 2011

Location

Lat Lon: 25.44012 N 98.44081 E

Toponym

Geo Loc Name: China: Gongxiaoshe spring, Tengchong, Yunnan

Environment

Isolation Source: hot spring sediment and water

Env Broad Scale: hot spring [ENVO:00000051]

Env Local Scale: spring water [ENVO:03600065]| sediment [ENVO:00002007]

Env Medium: spring water [ENVO:03600065]| sediment [ENVO:00002007]

Other

Depth: 0

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SRS19719932: Gongxiaoshe 2011 community sample

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Metadata retrieved 6 months ago