JSON

Genome sc|0002361

Name

“Nitrosomaritimum khambatensis”

Database

NCBI Assembly

Accession

GCA_011773785.1

Genomics

Accession
NCBI Assembly:GCA_011773785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.12%
  • Contamination: 1.94%
  • Quality: 86.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 26.0%)
  • 1 23S rRNA (up to 0.0%)
  • tRNAs for 17 amino acids
Sequencing depth
568.1 ×
Source
Other features
  • G+C Content: 34.77%
  • Coding Density: 90.14%
  • Codon Table: 11
  • N50: 59,249 bp
  • Contigs: 42
  • Largest Contig: 120,693 bp
  • Assembly Length: 1,370,394 bp
  • Ambiguous Assembly Fraction: 0.3%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-04
Location
Lat Lon: 21.5 N 72.5 E
Toponym
Geo Loc Name: India: Gulf of Khambhat
Environment
Sample Type: metagenomic assembly
Isolation Source: Pelagic sediment
Env Broad Scale: marine biome [ENVO:00000428]
Env Local Scale: marine pelagic biome [ENVO:01000023]
Env Medium: deep marine sediment [ENVO:00002113]
Other
Depth: 1-100 cm
Package
Ncbi Submission Package: MIMAG.sediment.5.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN13742134
All retrieved samples
Metadata retrieved 13 days ago


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