Genome sc|0002361

Genomics

Accession

NCBI Assembly:GCA_011773785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.12%
• Contamination: 1.94%
• Quality: 86.42

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 26.0%)
• 1 23S rRNA (up to 0.0%)
• tRNAs for 17 amino acids

Sequencing depth

568.1 ×

Source

• BioSample: SAMN13684380
• BioSample: SAMN13742134

Other features

• G+C Content: 34.77%
• Coding Density: 90.14%
• Codon Table: 11
• N50: 59,249 bp
• Contigs: 42
• Largest Contig: 120,693 bp
• Assembly Length: 1,370,394 bp
• Ambiguous Assembly Fraction: 0.3%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN13684380
• BioSample: SAMN13742134

Date

Collection Date: 2017-04

Location

Lat Lon: 21.5 N 72.5 E

Toponym

Geo Loc Name: India: Gulf of Khambhat

Environment

Sample Type: metagenomic assembly

Isolation Source: Pelagic sediment

Env Broad Scale: marine biome [ENVO:00000428]

Env Local Scale: marine pelagic biome [ENVO:01000023]

Env Medium: deep marine sediment [ENVO:00002113]

Other

Depth: 1-100 cm

Package

Ncbi Submission Package: MIMAG.sediment.5.0 • MIMS.me.sediment.5.0

Biosamplemodel: MIMAG.sediment • MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SAMN13684380: MIMAG Metagenome-assembled Genome sample from Nitrosopumilaceae archaeon
• SAMN13742134: MIMS Environmental/Metagenome sample from marine sediment of Gulf of Khambhat

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Metadata retrieved about 1 month ago