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cognitis nomina
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Genomes
sc|0002933
JSON
Genome sc|0002933
Name
Nitrosomaritimum yanchengense
Database
NCBI Assembly
Accession
GCA_042138165.1
Genomics
Accession
NCBI Assembly:
GCA_042138165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.03%
Contamination:
2.73%
Quality:
76.38
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 17 amino acids
Sequencing depth
10.0 ×
Source
BioSample: SAMN43471738
Other features
G+C Content:
34.42%
Coding Density:
87.65%
Codon Table:
11
N50:
3,916 bp
Contigs:
436
Largest Contig:
17,102 bp
Assembly Length:
1,495,043 bp
Ambiguous Assembly Fraction:
0.076%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2020-08
Location
Lat Lon:
33.35 N 120.15 E
Toponym
Geo Loc Name:
China: Yancheng Wetland, Jiangsu
Environment
Isolation Source:
not applicable
Env Broad Scale:
biome [
ENVO:00000428
]
Env Local Scale:
intertidal zone [
ENVO:00000316
]
Env Medium:
environmental material [
ENVO:00010483
]
Other
Depth:
0.05 m
Package
Ncbi Submission Package:
MIMAG.sediment.6.0
Biosamplemodel:
MIMAG.sediment
All retrieved samples
SAMN43471738
: MIMAG Metagenome-assembled Genome sample from Candidatus Nitrosomaritimum yanchengensis
Metadata retrieved
18 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN43471738
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2020-08
organism
Candidatus Nitrosomaritimum yanchengensis
env_broad_scale
biome [ENVO:00000428]
env_local_scale
intertidal zone [ENVO:00000316]
isolate
bin.10
NCBI submission package
MIMAG.sediment.6.0
Seq_name
22
depth
0.05 m
elev
not collected
geo_loc_name
China: Yancheng Wetland, Jiangsu
env_medium
environmental material [ENVO:00010483]
lat_lon
33.35 N 120.15 E
isolation_source
not applicable
BioSampleModel
MIMAG.sediment
ENA-FIRST-PUBLIC
2024-09-05
ENA-LAST-UPDATE
2024-09-06
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