Genome sc|0002933

Genomics

Accession

NCBI Assembly:GCA_042138165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.03%
• Contamination: 2.73%
• Quality: 76.38

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 17 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN43471738
• BioSample: SAMN43752186

Other features

• G+C Content: 34.42%
• Coding Density: 87.65%
• Codon Table: 11
• N50: 3,916 bp
• Contigs: 436
• Largest Contig: 17,102 bp
• Assembly Length: 1,495,043 bp
• Ambiguous Assembly Fraction: 0.076%

Automated checks

Complete

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Last modified 7 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN43471738
• BioSample: SAMN43752186

Date

Collection Date: 2020-08

Location

Lat Lon: 33° 21′ N, 120° 9′ E

View map of sampling locations

Toponym

Geo Loc Name: China: Yancheng Wetland, Jiangsu

Environment

Sample Type: metagenomic assembly

Isolation Source: intertidal aquifer

Env Broad Scale: biome [ENVO:00000428]

Env Local Scale: intertidal zone [ENVO:00000316]

Env Medium: environmental material [ENVO:00010483]

Other

Depth: 0.05 m

Package

Not detected

All retrieved samples

• SAMN43471738: MIMAG Metagenome-assembled Genome sample from Candidatus Nitrosomaritimum yanchengensis
• SAMN43752186: MIMS Environmental/Metagenome sample from wetland metagenome

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Metadata retrieved 7 days ago