SeqCode Registry
cognitis nomina
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Genomes
sc|0000408
JSON
Genome sc|0000408
Name
Pantoea floridensis
Database
NCBI Assembly
Accession
GCA_900215435.1
Genomics
Accession
NCBI Assembly:
GCA_900215435.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.19%
Quality:
99.05
Ribosomal and transfer RNA genes
7 16S rRNAs (up to 100.0%)
7 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
70.0 ×
Source
SRA: SRX3006580
Other features
G+C Content:
53.52%
Coding Density:
87.72%
Codon Table:
11
N50:
4,409,457 bp
Contigs:
5
Largest Contig:
4,409,457 bp
Assembly Length:
5,453,142 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Sample Metadata
Date
Not detected
Location
Lat Lon:
28.7109 N 81.4862 W
Toponym
Geo Loc Name:
USA: Florida, Wekiwa Springs State Park
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
MIGS.ba.5.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SRS2357071
: Enterobacteriaceae sp. JKS000234
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS2357071
×
Retrieved via SRX3006580
Keywords: GSC:MIxS;MIGS:5.0
strain
JKS000234
INSDC secondary accession
SRS2357071
NCBI submission package
MIGS.ba.5.0
lat lon
28.7109 N 81.4862 W
organism
Enterobacteriaceae bacterium JKS000234
geo loc name
USA: Florida, Wekiwa Springs State Park
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2017-01-26
ENA-LAST-UPDATE
2020-04-26
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