Keywords: GSC:MIxS;MIGS:6.0

strain

JKS000234

collection_date

missing

isol_growth_condt

missing

ref_biomaterial

missing

type-material

type strain of Pantoea floridensis

INSDC secondary accession

SRS2357071

organism

Pantoea floridensis

NCBI submission package

MIGS.ba.6.0

feature

missing

material

missing

biome

missing

host

not applicable

num_replicons

missing

geo_loc_name

USA: Florida, Wekiwa Springs State Park

lat_lon

28.7109 N 81.4862 W

isolation_source

missing

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2017-01-26

ENA-LAST-UPDATE

2023-11-27

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3006580" alias="JGI-SRA-76963" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3006580</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-76963</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Enterobacteriaceae sp. JKS000234</TITLE>
  <STUDY_REF accession="SRP111974">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP111974</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA364290</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS2357071">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2357071</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN06273570</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BCZAY</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <PACBIO_SMRT>
      <INSTRUMENT_MODEL>PacBio RS II</INSTRUMENT_MODEL>
    </PACBIO_SMRT>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2357071</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA587031</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3006580&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3006580&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>