Genome sc|0000767


Database

NCBI Assembly

Accession

GCA_009787175.1

Genomics

Accession
NCBI Assembly:GCA_009787175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.13%
  • Contamination: 4.67%
  • Quality: 74.78
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
21.3 ×
Source
Other features
  • G+C Content: 38.88%
  • Coding Density: 82.53%
  • Codon Table: 11
  • N50: 12,206 bp
  • Contigs: 173
  • Largest Contig: 37,405 bp
  • Assembly Length: 1,587,817 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete

Last modified 13 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-11-01 • 2012
Location
Lat Lon: 26.345 N 80.1360 W • Unknown
Toponym
Geo Loc Name: USA: Florida • USA: Laboratory-maintained colony at University of Florida
Environment
Sample Type: metagenomic assembly
Isolation Source: P4 gut compartment • P4
Env Broad Scale: woodland biome
Env Local Scale: tropical woodland biome
Env Medium: digestive tract
Other
Host: Nasutitermes corniger
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 13 days ago

Sequencing Experiments

Binning of metagenomic reads from the P4 gut compartment of Nasutitermes corniger
Nc150P4 termite gut iTAG


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