Bathycorpusculum acidaminoxidans

Citation

Formal styling

Bathycorpusculum acidaminoxidans Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32516

Nomenclature

Rank

Species

Syllabication

a.cid.am.in.ox'i.dans

Etymology

N.L. neut. n. acidum aminum, amino acid; N.L. pres. part. oxydans, to oxidize; N.L. part. adj. acidaminoxidans, amino acid-oxidizing

Nomenclatural type

NCBI Assembly: GCA_009786255.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. The G+C content of the type genome is 37.9 mol%, and the estimated genome size is 1.99 Mbp.

Classification

Archaea » “Bathyarchaeota” » Bathyarchaeia » Bathyarchaeales » Bathycorpusculaceae » Bathycorpusculum » Bathycorpusculum acidaminoxidans

Parent

Bathycorpusculum

Genomics

Accession

NCBI Assembly:GCA_009786255.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.07%
• Contamination: 4.21%
• Quality: 78.02

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 18 amino acids

Sequencing depth

710.0 ×

Source

• BioSample: SAMN12581673
• BioSample: SAMN03344594

Other features

• G+C Content: 37.91%
• Coding Density: 79.91%
• Codon Table: 11
• N50: 12,801 bp
• Contigs: 212
• Largest Contig: 38,825 bp
• Assembly Length: 1,994,150 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_009786255.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Bathycorpusculum acidaminoxidans (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii over 1 year ago

Submitted by

Protasov, Evgenii 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria about 1 year ago

Validated by

Rodriguez-R, Luis M 7 months ago

Date of priority

2024-04-16 06:48 PM (UTC)