Genome sc|0000798


Database

NCBI Assembly

Accession

GCA_009784005.1

Genomics

Accession
NCBI Assembly:GCA_009784005.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.14%
  • Contamination: 0.0%
  • Quality: 92.14
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
24.0 ×
Source
Other features
  • G+C Content: 45.53%
  • Coding Density: 79.54%
  • Codon Table: 11
  • N50: 43,757 bp
  • Contigs: 62
  • Largest Contig: 82,997 bp
  • Assembly Length: 1,688,578 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete

Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-01-31
Location
Lat Lon: 5.3454 N 53.2462 W • 5.3455 N 53.2462 W
Toponym
Geo Loc Name: French Guiana: Petit-Saut
Environment
Sample Type: metagenomic assembly
Isolation Source: P3 gut compartment
Env Broad Scale: woodland biome
Env Local Scale: tropical woodland biome
Env Medium: digestive tract
Other
Host: Labiotermes labralis
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples

Metadata retrieved 8 days ago

Sequencing Experiments

Metagenome of Labiotermes labralis P3 gut compartment
Binning of metagenomic reads from the P3 gut compartment of Labiotermes labralis


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