JSONPDF

Methanimicrococcus labiotermitis

Citation

Formal styling
Methanimicrococcus labiotermitis Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32597

Nomenclature

Rank
Species
Syllabication
la.bi.o.ter'mi.tis
Etymology
N.L. gen. n. labiotermitis, referring to Labiotermes, the host genus
Nomenclatural type
NCBI Assembly: GCA_009784005.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species identified by metagenomic analyses. The G+C content of the type genome is 45.5%, and the estimated genome size is 1.83 Mbp.
Classification
Archaea » Methanobacteriota » “Methanomicrobia” » Methanosarcinales » Methanosarcinaceae » Methanimicrococcus » Methanimicrococcus labiotermitis
Parent
Methanimicrococcus

Genomics

Accession
NCBI Assembly:GCA_009784005.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.14%
  • Contamination: 0.0%
  • Quality: 92.14
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
24.0 ×
Source
Other features
  • G+C Content: 45.53%
  • Coding Density: 79.54%
  • Codon Table: 11
  • N50: 43,757 bp
  • Contigs: 62
  • Largest Contig: 82,997 bp
  • Assembly Length: 1,688,578 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Protasov, Evgenii over 1 year ago
Submitted by
Protasov, Evgenii 9 months ago
Curators
Validated by
Rodriguez-R, Luis M 7 months ago
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license