Plant Pathology

ABSTRACT The stolbur disease associated with “ Candidatus Phytoplasma solani” (CaPsol) is very common in Europe and the Mediterranean regions and adversely affects perennial or annual plants but is rarely reported on cucurbits. We report the first multilocus genetic characterisation of CaPsol strains infecting cucurbit plants and the presence of some RNA viruses prevalent in cucurbits. Between 2019 and 2020, 156 symptomatic and nine asymptomatic plant samples were collected during surveys in cucurbit‐growing areas. Symptomatic plants exhibited leaf deformation, growth retardation, yellowing, flower deformation and other virus‐like symptoms. Molecular testing detected potyviruses, tobamoviruses and Cucumis melo endornavirus (CmEV) as single and double infections in 108 samples, but CaPsol was determined only in seven plants as a single infection. CaPsol strains infecting squash and watermelon in the Marmara region of Türkiye were genetically characterised by describing their tuf, vmp1 and stamp gene sequences. All cucurbit‐associated CaPsol strains were of the tuf ‐b1 genotype and five different stamp genotypes previously reported in other crops and wild plant reservoirs in Europe. Cucurbit CaPsol strains had vmp1 gene sequences corresponding to RFLP types V4 and V14, previously detected in the Mediterranean basin. These strains were not novel cucurbit‐specific genotypes but shared similarities with genotypes from diverse plant hosts across Europe. This indicated that CaPsol is not restricted to cucurbits and may persist in alternative plant hosts. Thus, disease management should include monitoring alternative plant reservoirs, rather than focusing solely on cucurbit production areas. Viral infections showed significantly higher prevalence compared to phytoplasma infections in the region.

Abstract “ Candidatus Liberibacter solanacearum” (Lso), transmitted by the potato psyllid ( Bactericera cockerelli ), is the causal agent of potato zebra chip, but can also infect other solanaceous plants, including peppers. Studies were conducted to investigate whether Lso could be transmitted to the next generation of plants through seeds from infected pepper plants. In 2014, jalapeno pepper plants were infested with psyllids carrying a mixture of Lso A and B (AB) at the AgriLife Research Station at Bushland. The study was again conducted in 2019 and pepper plants were infested with psyllids carrying Lso B or Lso AB. In each of the studies, noninfested plants served as controls. At harvest, fruits were collected and tested for the presence of Lso using quantitative PCR. Seeds from infected fruits were then tested for Lso. Overall, the percentage of seeds that tested positive for Lso ranged from 33% to 70%. However, Lso detection in embryos ranged only from 0% to 8%. Seed samples from Lso‐positive fruits were planted in the greenhouse to determine the impact of Lso on emergence and the incidence of Lso in emerged plants. Although plant emergence differed between some of the seeds obtained from Lso‐positive and ‐negative fruits, the overall impact of Lso on plant emergence was not consistent. However, of the 182 plants that emerged from seeds collected from infected fruits, none was positive for Lso, suggesting that seeds are unlikely to serve as sources for new Lso infections and their impact on disease epidemiology is negligible.

Abstract Whole‐genome sequencing of “ Candidatus Liberibacter asiaticus” (Las) indicated some polymorphic gene regions enabling the molecular characterization of this bacterium. Although the population diversity of Las in China has been previously studied, no reports have used a combination of a prophage region and short tandem repeat (STR) loci for phylogenetic relationship characterization. In this study, we investigated the genetic diversity and structure of 667 Las strains from nine provinces in southern China using multiple genetic loci including three type‐specific prophage loci, two STR loci, and a miniature inverted‐repeat transposable element (MITE) region. The results indicated that the genetic diversity varied according to the gene loci used. The prophage regions, including the MITEs, revealed significant genetic differences of Las populations in Yunnan and Guizhou from other provinces, while the STR loci only indicated a difference of Las population in Guizhou from those of other provinces. In particular, the Las population shown to be diverse in Jiangxi at the CLIBASIA_01215_STR locus was not diverse when measured using the other loci. Considering all loci, the Las populations from Yunnan and Guizhou were different, those from Guangdong and Guangxi were complex, while the Las population in Jiangxi was comparatively simple. Las populations from five neighbouring provinces, including Guangdong, Guangxi, Hunan, Fujian, and Jiangxi were grouped in a big cluster. The Las population structure changed with age according to the prophage type. This study evaluated the method used for studying the molecular diversity of Las populations and provided more detailed information on the geographical origin and epidemic trend of Chinese Las populations.

‘ Candidatus Liberibacter asiaticus’ ( CL as) is associated with the most destructive disease of citrus, huanglongbing ( HLB ). The most widely used methods for detection of CL as are PCR ‐based and require purification of DNA from plant samples. Elution of DNA from tissue prints made on nitrocellulose membranes followed by qPCR ( TPE ‐ qPCR ) was compared to DNA extraction of plant tissue followed by PCR (X‐ PCR ) by testing the same tissue samples. The former estimated a higher CL as population in tissue prints than the latter ( t ‐test; P  =   0.009). All extracts prepared for TPE ‐ qPCR throughout the experiment were also tested by conventional PCR and 80.8% were identified as positive. A similar set of stem and petiole tissue samples was tested by TPE ‐ qPCR and immunoassay. Although the detection rate by TPE ‐ qPCR was higher than by immunoassay, about 6% of tissue prints were positive by immunoassay but not by TPE ‐ qPCR . Thus, a higher detection rate would be achieved by combining TPE ‐ qPCR with immunoassay. Significant differences were observed in the performance of nitrocellulose membranes from different manufacturers in these assays. Immunotissue prints showed that the spatial distribution pattern of CL as infection varied widely from one sample to another, but the patterns were highly correlated among serial sections from the same sample, suggesting that CL as preferentially colonizes adjacent phloem cells in a vertical rather than horizontal direction.

Huanglongbing ( HLB ), caused by ‘ Candidatus Liberibacter asiaticus’ (Las), is a devastating disease of citrus trees in Florida. Previous work showed that the rootstock cultivar Cleopatra mandarin ( Citrus reticulata ) has a higher population of Las in roots than Swingle citrumelo ( C. paradisi  ×  Poncirus trifoliata ). Las reduced fibrous root biomass and sucrose content in Cleopatra mandarin more than in Swingle citrumelo. To understand the mechanisms for susceptibility to Las infection, sucrose and hormone metabolism status were evaluated in Cleopatra mandarin and Swingle citrumelo. In fibrous roots of Cleopatra mandarin, higher expression of genes related to sucrose cleavage was consistent with lower sucrose content compared to noninoculated seedlings at 5 weeks post‐root trimming (wpt). In fibrous roots of Swingle citrumelo, both sucrose content and gene expression related to sucrose cleavage were less disrupted by Las infection compared to Cleopatra mandarin at 5 wpt. Genes associated with salicylic acid ( SA ), ethylene ( ET ) and abscisic acid ( ABA ) synthesis, and ABA signalling, phospholipases D ( PLD ), and phospholipase A2 ( PLA 2) were activated by Las infection at 5 wpt in Cleopatra mandarin. Expression of downstream effectors of SA , i.e. NPR 1, WRKY 70 and PR 1, did not change in Cleopatra mandarin, suggesting inhibition of the response to SA by the elevation of ABA , ET and PLD . In contrast, the up‐regulation of PR 1, lower response of sucrose metabolism genes and down‐regulation of biosynthesis of phytohormones indicates that Swingle citrumelo activates a more effective defence against this biotrophic pathogen than Cleopatra mandarin.

Peach orchards in the northeast of Spain were severely affected in 2012 by a previously unreported disease in this area. The symptoms included early reddening, leaf curling, decline, abnormal fruits, and in some cases death of the peach trees. All the infected peach samples were positive for ‘ Candidatus Phytoplasma pyri’, but none were infected by the ‘ Ca . Phytoplasma prunorum’. In this work, potential vectors able to transmit ‘ Ca . Phytoplasma pyri’ from pear to peach and between peach trees were studied and their infective potential was analysed at different times of the year. Transmission trials of the phytoplasma with potential vectors to an artificial feeding medium for insects and to healthy peach trees were conducted. Additionally, isolated phytoplasmas were genetically characterized to determine which isolates were able to infect peach trees. Results showed that the only insect species captured inside peach plots that was a carrier of the ‘ Ca . Phytoplasma pyri’ phytoplasma was Cacopsylla pyri . Other insect species captured and known to be phytoplasma transmitters were present in very low numbers, and were not infected with ‘ Ca . Phytoplasma pyri’ phytoplasma. A total of 1928 individuals of C. pyri were captured in the peach orchards, of which around 49% were phytoplasma carriers. All the peach trees exposed to C. pyri in 2014, and 65% in 2015, were infected by ‘ Ca . Phytoplasma pyri’ 1 year after exposure, showing that this species is able to transmit the phytoplasma to peach. Molecular characterization showed that some genotypes are preferentially determined in peach.

Phytoplasmas of the apple proliferation group cause diseases in various fruit trees, mainly apples, pears and apricots. Immunodominant membrane protein, or ‘Imp’, shows high inter‐ and intraspecies gene variability, and is thus frequently used for population studies in these organisms. In this investigation, a survey was carried out of ‘ Candidatus Phytoplasma pyri’ imp gene diversity in the Czech Republic. In total, 12 imp genotypes that could be clustered into nine groups were identified. Using all publicly available data, 17 distinct imp genotypes (labelled A–K) were defined. Interestingly, genotypes C, H and I were more related to ‘ Ca . Phytoplasma mali’ than to other ‘ Ca . Phytoplasma pyri’ imp genotypes, indicating that some strains may represent a transitional type between the two species. As Imp probably plays an important role in host–pathogen interactions, description of its diversity in ‘ Ca . Phytoplasma pyri’ may help in understanding the epidemiology, symptomatology, and other aspects of pear decline disease. A simple RFLP PCR system is presented for rapid and cost‐effective discrimination of ‘ Ca . Phytoplasma pyri’ imp genotypes.

Huanglongbing ( HLB ), associated with the phloem‐limited bacterium ‘ Candidatus Liberibacter asiaticus’ (Las), is devastating trees in citrus orchards of Florida. Additionally, Phytophthora nicotianae , omnipresent in citrus soils, causes root rot that reduces water and nutrient uptake by fibrous roots. To investigate fibrous root damage and replacement and canopy size in relation to infection of fibrous roots by Las and P. nicotianae , rootstock seedlings of Swingle citrumelo ( Citrus paradisi  ×  Poncirus trifoliata ) were inoculated with Las or P. nicotianae in two greenhouse pot trials. Phytophthora nicotianae caused root damage within 5 weeks post‐inoculation, which led to greater reduction of canopy size than for Las‐infected seedlings by the end of the experiment. Las increased accumulation of fibrous root biomass at 5 weeks post‐root trimming (wpt) in the 2014 trial and at 11 wpt in the 2015 trial. New root length was not consistently increased by Las. Reduced total leaf area of symptomless Las‐infected seedlings compared to noninoculated controls might be due to the combined effect of altered carbohydrate allocation between shoots and roots and altered leaf morphology.

The use of proper management strategies for citrus huanglongbing ( HLB ), caused by ‘ Candidatus Liberibacter asiaticus’ (Las) and transmitted by Asian citrus psyllid ( ACP ) ( Diaphorina citri ), is a priority issue. HLB control is based on healthy seedlings, tolerant rootstock cultivars and reduction of ACP populations. Here, dynamic populations of Las in different citrus hosts and each instar of ACP were studied, together with the seasonal growth and distribution of Las in different tissues, using conventional and TaqMan real‐time PCR . Different levels of susceptibility/tolerance to HLB were seen, resulting in different degrees of symptom severity and growth effects on hosts or rootstocks. Troyer citrange, Swingle citrumelo and wood apple were highly tolerant among 11 rootstock cultivars. Regarding distribution and seasonal analysis of Las, mature and old leaves contained high concentrations in cool temperatures in autumn and spring. Las was detected earlier through psyllid transmission than through graft inoculation, and the amounts of Las ( AOL ) varied in different hosts. Thus, different AOL (10 4 –10 7 copy numbers μL −1 ) and Las‐carrying percentages ( LCP ; 40–53.3%) were observed in each citrus cultivar and on psyllids, respectively. Furthermore, both AOL and LCP were lower in nymphs than in adult psyllids, whereas the LCP of psyllids were not affected by increasing the acquisition‐access time. The present study has significant implications for disease ecology. The combination of early detection, use of suitable rootstocks and constraint of psyllid populations could achieve better management of HLB disease.

The phloem‐sucking psyllid Cacopsylla picta plays an important role in transmitting the bacterium ‘ Candidatus Phytoplasma mali’, the agent associated with apple proliferation disease. The psyllid can ingest ‘ Ca . Phytoplasma mali’ from infected apple trees and spread the bacterium by subsequently feeding on uninfected trees. Until now, this has been the most important method of ‘ Ca . Phytoplasma mali’ transmission. The aim of this study was to investigate whether infected C. picta are able to transmit ‘ Ca . Phytoplasma mali’ directly to their progeny. This method of transmission would allow the bacteria to bypass a time‐consuming reproductive cycle in the host plant. Furthermore, this would cause a high number of infected F 1 individuals in the vector population. To address this question, eggs, nymphs and adults derived from infected overwintering adults of C. picta were reared on non‐infected apple saplings and subsequently tested for the presence of ‘ Ca . Phytoplasma mali’. In this study it was shown for the first time that infected C. picta individuals transmit ‘ Ca . Phytoplasma mali’ to their eggs, nymphs and F 1 adults, thus providing the basis for a more detailed understanding of ‘ Ca . Phytoplasma mali’ transmission by C. picta .