Ochrobactrum gambitense

Citation

Formal styling

Ochrobactrum gambitense Díaz Rodríguez et al., 2022

Effective publication

Díaz Rodríguez et al., 2022

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xwx6hrsf (validated)

Canonical URL

https://seqco.de/i:23485

Nomenclature

Rank

Species

Syllabication

gam.bi.ten'se

Etymology

N.L. neut. adj. gambitense, of Gambita, the municipally where soil samples were taken to select the minimal lignocellulolytic bacterial consortium "MELMC"

Nomenclatural type

INSDC Nucleotide: CP098020.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the basis of MiGA taxonomic novelty analysis, and the type material is the genome MAG4.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Brucellaceae » Ochrobactrum » Ochrobactrum gambitense

Parent

Ochrobactrum

Genomics

Accession

INSDC Nucleotide:CP098020.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.0%
• Contamination: 0.0%
• Quality: 90.0

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 10.0%)
• tRNAs for 17 amino acids

Sequencing depth

62.0 ×

Source

• BioSample: SAMN28659272
• BioSample: SAMN28657967
• And 2 more…

See all sources

Other features

• G+C Content: 57.2%
• Coding Density: 86.64%
• Codon Table: 11
• N50: 2,526,949 bp
• Contigs: 1
• Largest Contig: 2,526,949 bp
• Assembly Length: 2,526,949 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Ochrobactrum gambitense (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 month ago
• Submission process status
• Quality checks before valid publication

Registered by

Jimenez, Diego over 2 years ago

Submitted by

Jimenez, Diego about 2 years ago

Curators

• Palmer, Marike
• Chuvochina, Maria (nomenclature)

Endorsed by

Palmer, Marike about 2 years ago

Validated by

Palmer, Marike about 2 years ago

Date of priority

2022-09-29 07:00 AM (UTC)