Methylopumilus


Citation

Formal styling
Methylopumilus Salcher et al., 2015 emend. Salcher et al., 2019
Effective publication
Salcher et al., 2015
Emended in
Salcher et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:vc1ok6m8 (validated)
Canonical URL
https://seqco.de/i:37730

Nomenclature

Rank
Genus
Inferred stem
Methylopumil-
Syllabication
Me.thy.lo.pu.mi'lus
Etymology
N.L. neut. n. methyl, pertaining to the methyl group; L. masc. adj. pumilus, dwarfish; N.L. masc. n. Methylopumilus, dwarfish methyl (group oxidizing) organism
Nomenclatural type
Methylopumilus planktonicusTs
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Consists of three species, Methylopumilus planktonicus (GCF_000981505.1), Methylopumilus universalis (GCF_006363895.1), and Methylopumilus rimovensis (GCF_006364615.1), that were initially proposed as Candidatus taxa in Salcher et. al. 2015 and Salcher et al. 2019. Type species is Methylopumilus planktonicus MMS-2-53 (GCF_000981505.1). Also known as LD28 or betIV from 16S rRNA gene based studies. Methylopumilus are generally very small in cell size (<0.1 μm3) and genome size (<1.5 Mb), i.e., they are genome-streamlined. They are aerobic methylotrophs containing pathways for methanol oxidation (Xox) and the RuMP (ribulose monophosphate) cycle for formaldehyde assimilation/oxidation. The genomes contain genes encoding two rhodopsins (proteorhodopsin and xantho-like rhodopsin) and the biosynthetic pathway for retinal biosynthesis. No genes for flagellar or pilus assembly and chemotaxis were annotated in any so far sequenced genomes. Methylopumilus are abundant in the plankton of lakes with a global distribution. Most strains were so far isolated via dilution-to extinction cultivation by using either autoclaved lake water or a defined medium containing methanol and methylamine as sole carbon sources, no growth is observed in rich medium or on agar plates (Salcher et al. 2015, Salcher et al. 2019, Layoun et al. 2024). None of the isolated strains were yet submitted to a culture collection because these bacteria are hard to maintain, i.e., they are very slowly growing, reach low densities in liquid culture, and do not grow on agar plates.
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Nitrosomonadales » Methylophilaceae » Methylopumilus
Parent
Methylophilaceae gtdb assigned in Salcher et al., 2015
Children (7)
Alternatively placed children (1)

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed 7 months ago by Salcher, Michaela M
Submitted
6 months ago by Salcher, Michaela M
Curators
Validated
6 months ago by Rodriguez-R, Luis M
Date of priority
2015-11-01 12:00 AM (UTC)   Important note

Publications
3

Citation Title
Layoun et al., 2024, The ISME Journal Flexible genomic island conservation across freshwater and marine Methylophilaceae
Salcher et al., 2019, The ISME Journal Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae
Emended this name
Salcher et al., 2015, The ISME Journal The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign
Effective publication
Assigned this taxon



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:vc1ok6m8