Methylomirabilis oxygeniiferaTs


Citation

Formal styling
Methylomirabilis oxygeniiferaTs corrig. Ettwig et al., 2010 (valid 2023)
Effective publication
Ettwig et al., 2010
Corrigendum
Oren, 2017 from “Methylomirabilis oxyfera” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:loeyelk6 (validated)
Cannonical URL
https://seqco.de/i:45

Nomenclature

Rank
Species
Syllabication
o.xy.ge.ni.i.fe'ra
Etymology
N.L. fem. adj. oxygeniifera, carrying oxygen
Nomenclatural type
NCBI Assembly: GCA_000091165.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The description is the same as given by Ettwig et al., 2010: Methane-oxidizing and nitrite-reducing bacterium of the candidate division NC10. Grows anaerobically, but produces oxygen for the aerobic oxidation of methane. Reduces nitrite to dinitrogen gas without a nitrous oxide reductase. Gram-negative rod with a diameter of 0.25–0.5 mm and a length of 0.8–1.1 mm. Mesophilic with regard to temperature and pH (enriched at 25–30 uC and pH 7–8). Slow growth (doubling time 1–2 weeks).
Classification
Bacteria » Methylomirabilota » Methylomirabilia » Methylomirabilales » Methylomirabilaceae » Methylomirabilis » Methylomirabilis oxygeniiferaTs
Parent
Methylomirabilis gtdb
Pseudonyms
  • Methylomirabilis oxyfera (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_000091165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.26%
  • Contamination: 2.59%
  • Quality: 83.31
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 58.58%
  • Coding Density: 88.15%
  • Codon Table: 11
  • N50: 2,752,854 bp
  • Contigs: 1
  • Largest Contig: 2,752,854 bp
  • Assembly Length: 2,752,854 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 11 months ago
Submitted by
Chuvochina, Maria 11 months ago
Curators
Endorsed by
Palmer, Marike 11 months ago
Validated by
Palmer, Marike 10 months ago
Date of priority
2023-07-11 04:34 AM (UTC)

Publications
12

Citation Title
Oren, 2017, International Journal of Systematic and Evolutionary Microbiology A plea for linguistic accuracy – also for Candidatus taxa
Corrigendum
Shen et al., 2016, Scientific Reports Comparison of community structures of Candidatus Methylomirabilis oxyfera-like bacteria of NC10 phylum in different freshwater habitats
Wu et al., 2015, Applied and Environmental Microbiology XoxF-Type Methanol Dehydrogenase from the Anaerobic Methanotroph “Candidatus Methylomirabilis oxyfera”
Kampman et al., 2014, Water Science and Technology Effect of temperature on denitrifying methanotrophic activity of ‘Candidatus Methylomirabilis oxyfera’
Rasigraf et al., 2014, Applied and Environmental Microbiology Autotrophic Carbon Dioxide Fixation via the Calvin-Benson-Bassham Cycle by the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera”
Vavilin, Rytov, 2013, Antonie van Leeuwenhoek Non-linear dynamics of carbon and hydrogen isotopic signatures based on a biological kinetic model of nitrite-dependent methane oxidation by “Candidatus Methylomirabilis oxyfera”
Kool et al., 2012, Applied and Environmental Microbiology Rare Branched Fatty Acids Characterize the Lipid Composition of the Intra-Aerobic Methane Oxidizer “Candidatus Methylomirabilis oxyfera”
Wu et al., 2012, FEMS Microbiology Letters Co-localization of particulate methane monooxygenase and cd1 nitrite reductase in the denitrifying methanotroph ‘Candidatus Methylomirabilis oxyfera’
Wu et al., 2012, Journal of Bacteriology Ultrastructure of the Denitrifying Methanotroph “Candidatus Methylomirabilis oxyfera,” a Novel Polygon-Shaped Bacterium
Luesken et al., 2012, Environmental Microbiology Effect of oxygen on the anaerobic methanotroph ‘Candidatus Methylomirabilis oxyfera’: kinetic and transcriptional analysis



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