Rhizobium halophilum


Citation

Formal styling
Rhizobium halophilum Shen et al., 2022 (priority 2025)
Effective publication
Shen et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xsogat83 (validated)
Canonical URL
https://seqco.de/i:49636 Copy

Nomenclature

Rank
Species
Syllabication
ha.lo.phi'lum
Etymology
Gr. masc. n. hals, salt; N.L. neut. adj. suff. -philum, loving (from Gr. neut. adj. philon, friend); N.L. neut. adj. halophilum, salt loving
Nomenclatural type
NCBI Assembly: GCF_021648825.1
Reference strain
Strain sc|0038882: TRM95001 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Colonies on NA agar plates were circular, convex, light yellow colored and rod shaped (1.12–1.20 μm in length and 0.45–0.50 μm in width) for 3 days at 30 °C. Growth occurred at 12–37 °C (optimum, 25 ℃); growth occurred at pH 6.0–9.0 (optimum, pH 6.5–7.0) and at 0–7% (w/v) NaCl (optimum, 1%). The following substrates were utilized on Biolog GENIII microplates: d-arabitol, i-erythritol, d-fructose, l-fructose, α-d-glucose, inosine, myo-inositol, α-d-lactose, d-mannose, d-mannitol, d-maltose, d-malic acid, l-malic acid, d-melibiose, d-raffinose, l-rhamnose, sorbitol, sucrose, d-trehalose, d-cellobiose, d-galactose, gentiobiose, glycogen, 3-methyl-glucose, glycerol, propionic acid, d-salicin, stachyose, d-turanose, β-methyl-d-glucoside, N-acetyl-d-glucosamine, N-acetyl-β-d-mannosamine, d-serine, N-acetyl-d-galactosamine, N-acetylneuraminic acid, d-glucose-6-PO4, d-fructose-6-PO4, d-aspartic acid, gelatin, glycyl-l-proline, l-alanine, l-arginine, l-aspartic acid, l-glutamic acid, d-gluconic acid, l-histidine, l-pyroglutamic, l-serine, pectin, d-glucuronic glucuronamide, mucic acid, quinic acid, α-keto-glutaric acid and urea. Positive for catalase, oxidase, urease, lipase, starch hydrolysis, milk coagulation and hydrogen peroxide. Negative for H2S production, reduction of nitrate to nitrite and melanin production. The whole-cell sugars consisted mainly of arabinose, galactose, glucose and ribose. Contained D, d-diaminopimelic acid as the diagnostic cell wall amino acid. The detected polar lipids were unidentified aminophospho lipids, unidentified phospholipids, phosphatidylcholine, unidentified lipids, hydroxy phosphatidyl ethanolamine and phospholipids of unknown structure containing glucosamine. Major fatty acids were Summed Feature 8 (68.4%), C19:0 cyclo ω8c, and C16:0. Q-10 was major the quinone. Resistant to ampicillin, chloramphenicol, erythromycin, gentamicin, nalidixic acid, streptomycin, tetracycline and vancomycin, but sensitive to amikacin and kanamycin.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Rhizobium » Rhizobium halophilum
Parent
Rhizobium ncbi

Genomics

Accession
NCBI Assembly:GCF_021648825.1
Cultures
Strain sc|0038882
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 2.8%
  • Quality: 85.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
Other features
  • G+C Content: 60.7%
  • Coding Density: 88.55%
  • Codon Table: 11
  • N50: 363,191 bp
  • Contigs: 41
  • Largest Contig: 916,787 bp
  • Assembly Length: 4,355,797 bp
  • Ambiguous Assembly Fraction: 0.0023%
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre, created 5 months ago and claimed about 1 month ago
Curators
Validated by
Rodriguez-R, Luis M 19 days ago
Date of priority
2025-03-20 05:09 PM (UTC)

Publications
1

Citation Title
Shen et al., 2022, Archives of Microbiology Rhizobium alarense sp. nov. and Rhizobium halophilum sp. nov. isolated from the nodule and rhizosphere of Lotus japonicus
Effective publication



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