Planktophila tarnitensis


Citation

Formal styling
Planktophila tarnitensis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51482

Nomenclature

Rank
Species
Syllabication
tar.ni.ten'sis
Etymology
N.L. fem. adj. tarnitensis, of Tarnita, referring to Lake Tarnița, Romania, the place from which the representative strain was isolated
Nomenclatural type
Genome sc|0004098 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named after Lake Tarnița, Romania, the place from which the representative strain was isolated.
Brief description. Planktophila tarnitensis TarE-7 (ENA accession number GCA_965267845) was isolated from the epilimnion (5m depth) of the mesotrophic Lake Tarnița, Romania (date: 2021-07-28) and it is the only isolated representative of the species. It has a complete circular genome of 1,347,384 bp, a GC content of 48.1% and a coding density of 95.3%. The closest isolated species is Planktophila vernalis MMS-IIB-142, with which it shares an average nucleotide identity of 92.3%. It lacks the oxidative part of the pentose phosphate pathway, as well as the capacity to synthesize asparagine. For Planktophila, it encodes a very low number of carbohydrate active enzymes (26 total enzymes belonging to 15 different families). It encodes one rRNA operon and 40 tRNA genes; additionally, it has both actinorhodopsin and heliorhodopsin, and the capacity for retinal biosynthesis. Recruitment analysis indicates that this species is not very abundant and widespread, but it is present in several freshwater environments, including Lake Paradise (Canada), and the German lakes Breiter Luzin, Stechlin and Tiefwaren. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila tarnitensis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267845.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 48.0%
  • Coding Density: 94.66%
  • Codon Table: 11
  • N50: 1,347,384 bp
  • Contigs: 1
  • Largest Contig: 1,347,384 bp
  • Assembly Length: 1,347,384 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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