Publications

4713

A Gram-stain-negative, aerobic, capsule-forming strain, designated DAS-389 T , was isolated from soil collected in the Kogelberg Nature Reserve, Western Cape, South Africa. The strain formed small pink colonies, with cells that multiplied by binary division. Optimum growth was observed at 20 °C to 26 °C and pH 5.5 to 6.5, and it tolerated a NaCl concentration up to 1.5% (w/v). DAS-389 T is chemoorganotrophic, with growth substrate preferences for sugars and polysaccharides, including fructose and starch, respectively. The genome of DAS-389 T had a genome size of 4,136,282 bp with an average G+C content of 63.49 mol% and encodes for an assortment of enzymes, carbohydrate metabolic pathways and several genes involved in stress and survival responses. Major fatty acids (>5%) of strain DAS-389 T were iso-C15:0, iso-C17:0, summed feature 3 (C16:1 ω7c and/or C16:1 ω6c) and summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-methyl). Comparative analysis of 16S rRNA gene sequences revealed that strain DAS-389 T shared the highest similarity with Alloacidobacterium dinghuense 4Y35 T (96.6%), followed by Acidipila rosea AP8 T (96.6%) and Paracidobacterium acidisoli 4G-K13T (96.3%). Phylogenetic analysis based on 16S rRNA gene sequences and the whole proteome placed DAS-389 T within a distinct clade, separate from recognized genera in the family Acidobacteriaceae . We therefore propose that strain DAS-389ᵀ represents a novel genus and species, Candidatus Dedyshia acidiphila gen. nov., sp. nov., within the family Acidobacteriaceae , order Terriglobia . The whole-genome sequence of strain DAS-389ᵀ [accession number: JBMGJV000000000 (PRJNA1221820) ] is designated as the nomenclatural type.

A phytoplasma associated with poinsettia has previously been reported in Korea, but the report primarily focused on stem flattening symptoms and was based solely on partial 16S ribosomal RNA (rRNA) gene sequence analysis. In this study, phytoplasma-infected poinsettias collected in Jinan and Jeonju, Korea were examined for diverse symptom expression and additional molecular characterization of the associated phytoplasma. All seven plants showed a free-branching phenotype. Symptom severity ranged from low freebranching, with larger leaves and long internodes, to severe free-branching, with shortened internodes and small, irregularly twisted leaves. Based on 16S rRNA gene sequence and iPhyClassifier analyses, the phytoplasma detected in this study was assigned to subgroup 16SrIII-A of the X-disease phytoplasma group (16SrIII). Although this assignment differs from the previous Korean report, which classified poinsettia-associated phytoplasmas subgroup 16SrIII-H, the present study interpreted the classification using an updated 16SrIII subgroup framework. Sequence analyses of more variable regions, including the 16S-23S intergenic spacer region, ribosomal protein (rp) operon, and secA gene, showed 99.46-99.55% nucleotide identity with ‘Candidatus Phytoplasma pruni’-related reference strains. Phylogenetic analyses showed that the poinsettia-associated phytoplasmas in Korea were closely related to the subgroup 16SrIII-A. These results expand the known symptom spectrum of phytoplasma-infected poinsettias and provide multilocus molecular characterization supporting the phylogenetic placement of poinsettia-associated phytoplasmas in Korea.

Periploca aphylla witches’ broom (PapWB) is a phytoplasma-associated disease first reported in south-western Iran in 2010. Recent observations showed that the disease is spreading to new areas. PapWB phytoplasmas, detected in symptomatic P. aphylla plants, exhibited identical nucleotide sequences in the 1.8 kb PCR amplicon encompassing the 16S rRNA gene, the 16S-23S spacer region and the 5′-end of the 23S rRNA gene. When compared with the reference strains of previously described ‘ Candidatus Phytoplasma’ species, the selected representative strain PapWB-S exhibited the highest 16S rRNA gene sequence identity (98.15%) with salt cedar witches’ broom (SCWB1) phytoplasma, the reference strain of ‘ Ca . P. tamaricis’. Moreover, the sequence identity values for the tufB, rplV-rpsC and secY genes of PapWB-S strain, when compared with those of reference strains of previously described ‘ Ca . Phytoplasma’ species, were below the thresholds adopted for describing new species. Phylogenetic analyses confirmed the close relationship of the strain PapWB-S with SCWB1 followed by other ‘ Ca . Phytoplasma’ species belonging to the ribosomal groups 16SrX, 16SrXX and 16SrXXXIII. Following the revised guidelines for describing ‘ Ca . Phytoplasma’ species, ‘ Ca . P. periplocae’ sp. nov., associated with PapWB disease, is proposed, and the 16S rRNA gene sequence (accessible at GenBank/NCBI accession number OQ819043) is its nomenclatural type.

Abstract “ Candidatus Liberibacter solanacearum” (Lso) is a phloem-limited bacterial pathogen transmitted by psyllid. In the USA, the haplotypes A and B are transmitted by the tomato psyllid, Bactericera cockerelli, and are responsible for economic damage to the solanaceous crop industry. In tomato, haplotypes A and B cause diseases with differing degrees of severity, yet their underlying mechanisms are not well understood. The role that abiotic stress plays in disease development has not been characterized. In the present study, we evaluated whether water stress influenced the development of symptoms associated with these haplotypes in tomato ( Solanum lycopersicum “Moneymaker”). First, pot-grown tomato plants were subjected to either a control or a water-stress regime, then they were assigned to one of three infection treatments (Lso-free, LsoA, or LsoB) under laboratory-controlled conditions. Symptom development was monitored for up to 8 weeks following infection. Results of this experiment revealed that water stress significantly reduced the plant water potential and was the primary driver of reduced height, with infection only having an effect in later weeks. Water stress also increased the detectability of Lso throughout the plant and across three timepoints (weeks 4, 6, and 8 after infection). This increase in Lso-positive tissues suggests that water stress creates a more homogenous distribution of Lso throughout the plant. More noticeably, water stress significantly reduced the severity of the disease associated with haplotype A but not B. Overall, these findings revealed the existence of haplotype-specific interactions between Lso infection and water stress on the tomato health. This work highlights the influence of abiotic factors on plant health.