JSON

Genome sc|0000146

Name

Palauibacter irciniicola

Database

NCBI Assembly

Accession

GCA_009836005.1

Genomics

Accession
NCBI Assembly:GCA_009836005.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 63.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 69.44%
  • Coding Density: 93.55%
  • Codon Table: 11
  • N50: 55,937 bp
  • Contigs: 114
  • Largest Contig: 158,930 bp
  • Assembly Length: 3,599,158 bp
  • Ambiguous Assembly Fraction: 0.0072%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2016-10
Location
Lat Lon: 18.49 S 147.38 E
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Environment
Isolation Source: Sponge tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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