JSONPDF

Palauibacter ramosifaciens

Citation

Formal styling
Palauibacter ramosifaciens Aldeguer-Riquelme et al., 2023
Effective publication
Aldeguer-Riquelme et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:0hkazsoc (validated)
Canonical URL
https://seqco.de/i:23790

Nomenclature

Rank
Species
Syllabication
ra.mo.si.fa'ciens
Etymology
L. masc. adj. ramosus, branching, having many branches; L. pres. part. faciens, making; N.L. masc. n. ramosifaciens, branched synthesizer, referring to branched-chain amino acids
Nomenclatural type
NCBI Assembly: GCA_009845855.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Classification
Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter ramosifaciens
Parent
Palauibacter gtdb

Genomics

Accession
NCBI Assembly:GCA_009845855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.83%
  • Coding Density: 92.68%
  • Codon Table: 11
  • N50: 56,475 bp
  • Contigs: 120
  • Largest Contig: 158,800 bp
  • Assembly Length: 3,657,233 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Aldeguer-Riquelme, Borja almost 2 years ago
Submitted by
Aldeguer-Riquelme, Borja over 1 year ago
Curators
Endorsed by
Chuvochina, Maria over 1 year ago
Validated by
Chuvochina, Maria over 1 year ago
Date of priority
2023-06-23 07:38 AM (UTC)

Publications
1

Citation Title
Aldeguer-Riquelme et al., 2023, mSystems Distribution, abundance, and ecogenomics of the Palauibacterales , a new cosmopolitan thiamine-producing order within the Gemmatimonadota phylum
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license