Palauibacter ramosifaciens

Citation

Formal styling

Palauibacter ramosifaciens Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23790

Nomenclature

Rank

Species

Syllabication

ra.mo.si.fa'ciens

Etymology

L. masc. adj. ramosus, branching, having many branches; L. pres. part. faciens, making; N.L. masc. n. ramosifaciens, branched synthesizer, referring to branched-chain amino acids

Nomenclatural type

NCBI Assembly: GCA_009845855.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter ramosifaciens

Parent

Palauibacter gtdb

Genomics

Accession

NCBI Assembly:GCA_009845855.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.6%
• Contamination: 3.3%
• Quality: 79.1

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN12347683

Other features

• G+C Content: 68.83%
• Coding Density: 92.68%
• Codon Table: 11
• N50: 56,475 bp
• Contigs: 120
• Largest Contig: 158,800 bp
• Assembly Length: 3,657,233 bp
• Ambiguous Assembly Fraction: 0.013%

Submitter comments

Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_009845855.1
• GTDB Tree: s__Palauibacter ramosifaciens
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Palauibacter ramosifaciens (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja about 2 years ago

Submitted by

Aldeguer-Riquelme, Borja almost 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)