Palauibacter poriticola

Citation

Formal styling

Palauibacter poriticola Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23793

Nomenclature

Rank

Species

Syllabication

po.ri.ti'co.la

Etymology

N.L. n. Porites, name of the coral genus; L. masc. / fem. n. suff. -cola, inhabitant; L. masc. n. poriticola, inhabitant of Porites

Nomenclatural type

NCBI Assembly: GCA_012270965.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter poriticola

Parent

Palauibacter gtdb

Genomics

Accession

NCBI Assembly:GCA_012270965.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.11%
• Contamination: 3.3%
• Quality: 73.61

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 73.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN11878267
• And 11 more…

Other features

• G+C Content: 68.94%
• Coding Density: 90.15%
• Codon Table: 11
• N50: 80,204 bp
• Contigs: 99
• Largest Contig: 240,648 bp
• Assembly Length: 3,562,629 bp
• Ambiguous Assembly Fraction: 0.02%

Submitter comments

Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_012270965.1
• GTDB Tree: s__Palauibacter poriticola
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Palauibacter poriticola (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja about 2 years ago

Submitted by

Aldeguer-Riquelme, Borja almost 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)