Palauibacter rhopaloidicola

Citation

Formal styling

Palauibacter rhopaloidicola Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23804

Nomenclature

Rank

Species

Syllabication

rho.pa.loi.di'co.la

Etymology

N.L. masc. n. Rhopaloides, name of the sponge genus; L. masc. / fem. n. suff. -cola, inhabitant; N.L. masc. n. rhopaloidicola, inhabitant of Rhopaloides

Nomenclatural type

NCBI Assembly: GCA_947581625.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter rhopaloidicola

Parent

Palauibacter gtdb

Genomics

Accession

NCBI Assembly:GCA_947581625.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.51%
• Contamination: 4.4%
• Quality: 72.51

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 27.0%)
• tRNAs for 20 amino acids

Source

• SRA: SRR10996927

Other features

• G+C Content: 68.88%
• Coding Density: 92.72%
• Codon Table: 11
• N50: 132,675 bp
• Contigs: 58
• Largest Contig: 287,516 bp
• Assembly Length: 4,078,012 bp
• Ambiguous Assembly Fraction: 0.013%

Submitter comments

 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_947581625.1
• GTDB Tree: s__Palauibacter rhopaloidicola
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Palauibacter rhopaloidicola (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja almost 2 years ago

Submitted by

Aldeguer-Riquelme, Borja over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)