Sororendozoicomonas aggregata^Ts

Citation

Formal styling

Sororendozoicomonas aggregata^Ts Maire et al., 2024

Effective publication

Maire et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:oe5jqwk0 (validated)

Canonical URL

https://seqco.de/i:32313

Nomenclature

Rank

Species

Syllabication

ag.gre.ga'ta

Etymology

L. part. adj. aggregata, joined together

Nomenclatural type

NCBI Assembly: GCA_031528575.1

Reference strain

Pac_P3-11-1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sororendozoicomonas aggregata (ag.gre.ga'ta. L. fem. part. adj. aggregata, joined together, referring to the ability to form aggregates within coral tissues). The new species contains two strains isolated from Pocillopora corals (Pac-P3-11-1, from the present study, and Endozoicomonadaceae SCSIO12664).

Type strain: Pac_P3-11-1, isolated from tissues of the coral Pocillopora acuta, collected from Orpheus Island, Australia (18°36'16.26" S, 146°29'24.27" E). Taxonomic assignment based on concatenated marker gene phylogenies as well as 16S rRNA gene phylogeny. Grows on Marine Agar 2216 (Difco) between 23°C and 28°C, forming circular, white, raised, sticky colonies with entire margins. 

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Oceanospirillales » Endozoicomonadaceae » Sororendozoicomonas » Sororendozoicomonas aggregata^Ts

Parent

Sororendozoicomonas

Genomics

Accession

NCBI Assembly:GCA_031528575.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 97.13%
• Contamination: 0.88%
• Quality: 92.73

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

61.0 ×

Source

• BioSample: SAMN37218445

Other features

• G+C Content: 46.7%
• Coding Density: 79.58%
• Codon Table: 11
• N50: 37,409 bp
• Contigs: 201
• Largest Contig: 102,874 bp
• Assembly Length: 4,041,637 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.2.2
rRNA genes were detected via annotation with Bakta v1.7.0

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_031528575.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Sororendozoicomonas aggregata (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Maire, Justin over 1 year ago

Submitted by

Maire, Justin about 1 year ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike about 1 year ago

Validated by

Palmer, Marike 11 months ago

Date of priority

2024-02-05 12:54 AM (UTC)