Methanimicrococcus hongohii

Citation

Formal styling

Methanimicrococcus hongohii Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32596

Nomenclature

Rank

Species

Syllabication

hon.goh'i.i.

Etymology

N.L. gen. masc. n. hongohii, of Hongoh, named after Yuichi Hongoh in recognition of his important contributions to arthropod gut microbiology

Nomenclatural type

NCBI Assembly: GCA_032594095.1

Reference strain

Hf6 = DSM 114388 = JCM 39385

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Irregular cocci cells 1–2 µm in diameter, non-motile. Use methanol and methylamines as methanogenesis substrates together with hydrogen. Requires acetate and Casamino acids; formate is stimulatory. The optimum temperature is 37 °C. The G+C content of the type genome is 41.0%, and the genome size is 2.13 Mbp. 

Classification

Archaea » Methanobacteriota » “Methanomicrobia” » Methanosarcinales » Methanosarcinaceae » Methanimicrococcus » Methanimicrococcus hongohii

Parent

Methanimicrococcus ncbi

Genomics

Accession

NCBI Assembly:GCA_032594095.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 3 16S rRNAs (up to 100.0%)
• 3 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

143.0 ×

Source

• BioSample: SAMN34026937

Other features

• G+C Content: 43.0%
• Coding Density: 75.43%
• Codon Table: 11
• N50: 2,193,213 bp
• Contigs: 1
• Largest Contig: 2,193,213 bp
• Assembly Length: 2,193,213 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• NCBI Taxonomy: 3028295
• GTDB Genome: GCA_032594095.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanimicrococcus hongohii (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii about 1 year ago

Submitted by

Protasov, Evgenii 6 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-04-16 06:48 PM (UTC)