Mangrovimarina plasticivorans^Ts

Citation

Formal styling

Mangrovimarina plasticivorans^Ts Jiménez et al., 2024

Effective publication

Jiménez et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:ayug-nu6 (validated)

Canonical URL

https://seqco.de/i:44055

Nomenclature

Rank

Species

Syllabication

plas.ti.ci.vo'rans

Etymology

N.L. neut. n. plasticum, plastic; L. pres. part. vorans, devouring, destroying; N.L. part. adj. plasticivorans, plastic-devouring referring to ability of organism to catabolize the plastic

Nomenclatural type

NCBI Assembly: GCA_963966365.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, ANI, AAI, phylogenomic tree, and the type material is the genome MAG11A_P8. The MAG was reconstructed from PET-transforming bacterial consortium and encoded for two putative monohydroxyethyl terephthalate hydrolases. In addition, genes involved in PET-monomers catabolism were found within the genome.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Mangrovimarina » Mangrovimarina plasticivorans^Ts

Parent

Mangrovimarina

Genomics

Accession

NCBI Assembly:GCA_963966365.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.0%
• Contamination: 0.5%
• Quality: 96.5

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

2773.0 ×

Source

• BioSample: PRJEB72453

Other features

• G+C Content: 62.83%
• Coding Density: 89.58%
• Codon Table: 11
• N50: 265,208 bp
• Contigs: 29
• Largest Contig: 757,624 bp
• Assembly Length: 4,603,441 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM v1.2.2

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_963966365.1
• Wikispecies: Mangrovimarina plasticivorans (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 1 day ago
• Submission process status
• Quality checks before valid publication

Registered by

Jimenez, Diego 7 months ago

Submitted by

Jimenez, Diego 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Rodriguez-R, Luis M 4 months ago

Validated by

Palmer, Marike 1 day ago

Date of priority

2024-09-30 02:00 PM (UTC)