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Caldisaccharidevorator malaysiensis

Citation

Formal styling
Caldisaccharidevorator malaysiensis Nou et al., 2024
Effective publication
Nou et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:x3m88du8 (validated)
Canonical URL
https://seqco.de/i:44084

Nomenclature

Rank
Species
Syllabication
ma.lay.si.en'sis
Etymology
N.L. masc. adj. malaysiensis, of Malaysia, the country where this organism is from
Nomenclatural type
NCBI Assembly: GCA_025057575.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The sole genome representative of this species was recovered from metagenomes of microbial mats in SKY hot spring, Malaysia. The GC content is 55%. Subunits of both the high- and low-affinity terminal oxidase are encoded by the genome.
Classification
Bacteria » Armatimonadota » Fervidibacteria » Fervidibacterales » Fervidibacteraceae » Caldisaccharidevorator » Caldisaccharidevorator malaysiensis
Parent
Caldisaccharidevorator

Genomics

Accession
NCBI Assembly:GCA_025057575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.89%
  • Contamination: 2.33%
  • Quality: 79.24
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
9.7 ×
Source
Other features
  • G+C Content: 55.0%
  • Coding Density: 93.45%
  • Codon Table: 11
  • N50: 48,151 bp
  • Contigs: 102
  • Largest Contig: 132,961 bp
  • Assembly Length: 2,779,926 bp
  • Ambiguous Assembly Fraction: 0.004%
Submitter comments
Genome quality estimates were done with both CheckM and CheckM2, with values reported here for CheckM2. The number of tRNAs were calculated with tRNAscan-SE v. 2.0.11 and rRNAs were identified with barrnap v. 0.9.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 9 months ago
Submitted by
Palmer, Marike 9 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 5 months ago
Validated by
St. John, Emily 29 days ago
Date of priority
2024-11-20 02:57 PM (UTC)

Publications
1

Citation Title
Nou et al., 2024, Nature Communications Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Effective publication


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