Thalassovivens spotaeTs


Citation

Formal styling
Thalassovivens spotaeTs Lanclos et al., 2025
Effective publication
Lanclos et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:cwvpuxq6 (validated)
Canonical URL
https://seqco.de/i:50984 Copy

Nomenclature

Rank
Species
Syllabication
spo'tae
Etymology
N.L. gen. n. spotae, in reference to the San Pedro Ocean Time series (SPOT), from which the strain was isolated
Nomenclatural type
NCBI Assembly: GCA_034423775.1
Reference strain
Strain sc|0040320: US3C007 = ATCC TSD-433 = NCMA B160 = DSM 119208 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition to the characteristics of the genus, it has the following features. Cells are coccobacillus shaped, pleomorphic, with average dimensions of 0.23 μm radius, 1.65 μm length, and 0.44 μm3 volume. Halophilic, growing in salinities of 15–49 ppt, but not at 10 ppt or below. Mesophilic, growing between 16–25°C, but not at temperatures of 12°C or below, or at 28.5°C or above. Has a maximum growth rate of 1.55 +/− 0.05 divisions day−1 at 20°C and salinity of 30 ppt.

The type strain, US3C007T (= ATCC TSD-433T = NCMA B160T), was isolated from surface water (2 m) collected at the San Pedro Ocean Time series (33°33’ N, 118°24’ W). The genome sequence is circularized at 3622411 bp with 50.7% GC content. The genome is available on NCBI at BioProject number PRJNA1044073.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Roseobacteraceae » Thalassovivens » Thalassovivens spotaeTs
Parent
Thalassovivens assigned in Lanclos et al., 2025

Genomics

Accession
NCBI Assembly:GCA_034423775.1
Cultures
Strain sc|0040320
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
54.0 ×
Source
Other features
  • G+C Content: 50.5%
  • Coding Density: 88.34%
  • Codon Table: 11
  • N50: 3,622,411 bp
  • Contigs: 1
  • Largest Contig: 3,622,411 bp
  • Assembly Length: 3,622,411 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 21 hours ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
4 months ago by Thrash, Cameron
Submitted
4 months ago by Thrash, Cameron
Curators
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-05-14 08:42 PM (UTC)

Publications
1

Citation Title
Lanclos et al., 2025, ISME Communications New isolates refine the ecophysiology of the Roseobacter CHAB-I-5 lineage
Effective publication
Assigned this taxon



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