Hepatobacter penaei^Ts

Citation

Formal styling

Hepatobacter penaei^Ts Nunan et al., 2013 (valid 2023)

Effective publication

Nunan et al., 2013

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:4eldu-g9 (validated)

Canonical URL

https://seqco.de/i:121

Nomenclature

Rank

Species

Syllabication

pe.nae'i

Etymology

N.L. gen. n. penaei, of the prawn genus Penaeus

Nomenclatural type

NCBI Assembly: GCA_000742475.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Nunan et al., 2013: Obligate intercellular pathogen of Penaeus vannamei, the Pacific white shrimp, that cannot be cultivated in cell-free media. The geographic range is limited to the western hemisphere. The Gram-negative organism is motile by means of eight flagella located at the basal apex. The bacteria present two morphological variants consisting of a rod-shaped organism (0.25 by 0.9 μm) and a helical form (0.25 by 2 to 3.5 μm). Phylogenetic analysis, inferred from 16S rRNA and gyrase B gene sequences, places this bacterium within the class Alphaproteobacteria.

Notes

Reasoning of exclusion for validation under the ICNP:
"Although many techniques have been used over the years to characterize the causative pathological agent of NHP, the obligate intracellular nature of the bacteria has prevented the unequivocal isolation of the strain." Nunan et al. 2013

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Holosporales » Hepatobacteraceae » Hepatobacter » Hepatobacter penaei^Ts

Parent

Hepatobacter gtdb

Genomics

Accession

NCBI Assembly:GCA_000742475.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 91.94%
• Contamination: 0.0%
• Quality: 91.94

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

927.0 ×

Source

• BioSample: SAMN02996437

Other features

• G+C Content: 49.75%
• Coding Density: 89.38%
• Codon Table: 11
• N50: 334,235 bp
• Contigs: 5
• Largest Contig: 376,171 bp
• Assembly Length: 1,115,609 bp
• Ambiguous Assembly Fraction: 0.083%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_000742475.1
• GTDB Tree: s__Hepatobacter penaei
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Hepatobacter penaei (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria over 1 year ago

Submitted by

Chuvochina, Maria over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Rodriguez-R, Luis M over 1 year ago

Date of priority

2023-08-22 03:36 AM (UTC)