Anisomitus miaeTs


Citation

Formal styling
Anisomitus miaeTs Kiran et al., 2026
Effective publication
Kiran et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:zlg3gn05 (validated)
Canonical URL
https://seqco.de/i:51464

Nomenclature

Rank
Species
Syllabication
mi'ae
Etymology
L. gen. fem. n. miae, of Mia, daughter of author
Nomenclatural type
NCBI Assembly: GCA_054906415.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This bacterium was characterised from the faeces of children living in Mali. It is in the group of bacteria commonly referred to as Segmented filamentous bacteria (SFB); known also as Candidatus Arthromitus (greek for “jointed thread”), as proposed by Snel et al. (1995), and now named Anisomitus after the first SFB described in vertebrates by French zoologist Pierre-Paul Grassé (1925). This bacterium is Gram variable and spore-forming, hybridises with the 16S rRNA-targeted oligonucleotide probe (5’-GGG TAC TTA TTG CGT TTG CGA CGG CAC-3’; Urdaci et al., 2001), and has a 16S rRNA gene sequence that clusters within the monophyletic group in the Clostridiaceae that includes SFB from hosts such as the mouse, rat, turkey, chicken, and human. The genome is approximately 1.6 to 1.7Mb in size with a GC content of approximately 30% and includes genes for chemotaxis and the synthesis of flagella. The bacterium has a short form with an apparent tip and forms filaments that include a tip structure at one end. The filaments can be morphologically uneven, with a more smooth and thin morphology closer to the tip and a thickening with increased distance from the tip including the appearance of more bulbous sections that are particularly pronounced after spore formation.
Classification
Bacteria » Bacillota » Clostridia » Eubacteriales » Clostridiaceae » Anisomitus » Anisomitus miaeTs
Parent
Anisomitus

Genomics

Accession
NCBI Assembly:GCA_054906415.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.85%
  • Contamination: 0.62%
  • Quality: 96.75
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 41.0%)
  • tRNAs for 19 amino acids
Sequencing depth
307.0 ×
Source
Other features
  • G+C Content: 30.7%
  • Coding Density: 89.45%
  • Codon Table: 11
  • N50: 233,741 bp
  • Contigs: 13
  • Largest Contig: 699,134 bp
  • Assembly Length: 1,685,034 bp
  • Ambiguous Assembly Fraction: 0.3%
Submitter comments
The tRNA genes were identified using the Prokka pipeline while rRNA genes were detected with Barrnap. Although Barrnap indicated low completeness of the 16S rRNA gene in the genome assembly (presence of V1-V3 16S rRNA gene sequence only), full-length 16S rRNA gene sequencing using PacBio (NCBI SRA accession: SRR35543630) from faecal DNA revealed a complete 16S rRNA gene with 100% identity to the corresponding sequence in the genome assembly. The 16S rRNA gene sequence is therefore considered complete. Genome completeness and contamination were assessed using CheckM2 v1.1.0. The NCBI 16S rRNA accession number of the genome sequence is PX000509 and the raw read FASTQ files are available under the accession numbers SRR35183424, SRR35215812, SRR35215811 and SRR35215810. 
Automated checks
Complete

Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 8 months ago by Schnupf, Pamela
Submitted
8 months ago by Schnupf, Pamela
Curators
Endorsed
5 months ago by Rodriguez-R, Luis M
Validated
4 days ago by Rodriguez-R, Luis M
Date of priority
2026-05-11 12:21 PM (UTC)

Publications
1

Citation Title
Kiran et al., 2026, Nature Communications Segmented filamentous bacteria are worldwide human gut commensals
Effective publication



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