Velaminicoccus archaeovorus^Ts

Citation

Formal styling

Velaminicoccus archaeovorus^Ts corrig. Kizina et al., 2022 (valid 2024)

Effective publication

Kizina et al., 2022

Corrigendum

In SeqCode Registry from “Velamenicoccus archaeovorus” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:pgdylp80 (validated)

Canonical URL

https://seqco.de/i:23450

Nomenclature

Rank

Species

Syllabication

ar.chae.o.vo'rus

Etymology

Gr. masc. adj. archaios, ancient; L. v. voro, to eat, to devour; N.L. masc. adj. archaeovorus, archaea (ancient microorganisms) devouring

Nomenclatural type

INSDC Nucleotide: CP019384.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is represented by the phylotype and strain LiM and its genome (GenBank number CP019384). The genome of 1.97 Mb has a GC content of 52.9%. OP3 LiM was highly enriched in a limonene-degrading methanogenic enrichment culture. Cells are coccoid. They are ultramicrobacteria 0.2 μm in diameter and occur free living and attached to other microorganisms. The bacterium is maintained in slowly growing Methanosaeta-rich methanogenic enrichment cultures in freshwater medium with low concentrations of limonene as the carbon source at 28°C. It can be visualized by the FISH probe OP3-565.

Notes

The name was corrected from "Velamenicoccus archaeovorus" to Velaminicoccus archaeovorus in the SeqCode Registry. The authors of the effective publication were not in support of this change.

Classification

Bacteria » Omnitrophota » “Velamenicoccia” » “Velamenicoccales” » “Velamenicoccaceae” » Velaminicoccus » Velaminicoccus archaeovorus^Ts

Parent

Velaminicoccus gtdb

Pseudonyms

• Velamenicoccus archaeovorus (Original, corrected name)

Genomics

Accession

INSDC Nucleotide:CP019384.1

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

45.0 ×

Source

• BioSample: SAMN06176963

Other features

• G+C Content: 52.9%
• Coding Density: 89.92%
• Codon Table: 11
• N50: 1,974,201 bp
• Contigs: 1
• Largest Contig: 1,974,201 bp
• Assembly Length: 1,974,201 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Closed genome obtained from physically enriched cells. 454 and illumina sequences. Published as closed genome. A GC-polymer within the closed genome is not completely covered by reads, thus it may be a linear genome.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Tree: s__Velamenicoccus archaeovorus
• Wikispecies: Velaminicoccus archaeovorus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 2 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike 3 months ago

Submitted by

Palmer, Marike 3 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• St. John, Emily (nomenclature)

Endorsed by

St. John, Emily 2 months ago

Validated by

Rodriguez-R, Luis M 2 months ago

Date of priority

2024-10-04 01:57 PM (UTC)