Planktomarina forsetii

Citation

Formal styling

Planktomarina forsetii Liu et al., 2023 (valid 2024)

Effective publication

Liu et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:8lujptmc (validated)

Canonical URL

https://seqco.de/i:24046

Nomenclature

Rank

Species

Syllabication

for.set'i.i

Etymology

N.L. gen. n. forsetii, of Forseti, Scandinavian god of justice and reconciliation resident on Helgoland, from where the genome was recovered.

Nomenclatural type

NCBI Assembly: GCA_951543265.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material, GCA_951543265.1 (MAG C3-11), is a metagenome-assembled genome derived from a water sample (Biosample: SAMEA5407188). The assembly is of high quality with a mean completeness of 96.74% and 0.1% contamination and contains 19 tRNAs. The genome size is 3.12 Mbp (raw: 3.02 Mbp) with a GC content of 0.51. 

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Planktomarina » Planktomarina forsetii

Parent

Planktomarina

Genomics

Accession

NCBI Assembly:GCA_951543265.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.74%
• Contamination: 0.1%
• Quality: 96.24

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

6.0 ×

Source

• BioSample: SAMEA5407188
• BioSample: SAMN08778202

Other features

• G+C Content: 51.0%
• Coding Density: 88.79%
• Codon Table: 11
• N50: 114,268 bp
• Contigs: 83
• Largest Contig: 310,510 bp
• Assembly Length: 3,018,224 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_951543265.1
• Wikispecies: Planktomarina forsetii (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Brinkhoff, Thorsten almost 2 years ago

Submitted by

Brinkhoff, Thorsten 5 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 5 months ago

Validated by

Palmer, Marike 5 months ago

Date of priority

2024-07-30 10:55 AM (UTC)